Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC22.32■■□□□ 1.16
HMGCS2P54868 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
HMGCS2P54868 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC22.32■■□□□ 1.16
HMGCS2P54868 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
HMGCS2P54868 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
HMGCS2P54868 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC22.31■■□□□ 1.16
HMGCS2P54868 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC22.31■■□□□ 1.16
HMGCS2P54868 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
HMGCS2P54868 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC22.31■■□□□ 1.16
HMGCS2P54868 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
HMGCS2P54868 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
HMGCS2P54868 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC22.31■■□□□ 1.16
HMGCS2P54868 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC22.31■■□□□ 1.16
HMGCS2P54868 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
HMGCS2P54868 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC22.31■■□□□ 1.16
HMGCS2P54868 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC22.31■■□□□ 1.16
HMGCS2P54868 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC22.31■■□□□ 1.16
HMGCS2P54868 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
HMGCS2P54868 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC22.31■■□□□ 1.16
HMGCS2P54868 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC22.31■■□□□ 1.16
HMGCS2P54868 AC112907.2-201ENST00000448639 330 ntBASIC22.31■■□□□ 1.16
HMGCS2P54868 WDR88-203ENST00000592765 651 ntTSL 5 BASIC22.31■■□□□ 1.16
HMGCS2P54868 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
HMGCS2P54868 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC22.31■■□□□ 1.16
HMGCS2P54868 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
HMGCS2P54868 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
HMGCS2P54868 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
HMGCS2P54868 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC22.3■■□□□ 1.16
HMGCS2P54868 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC22.3■■□□□ 1.16
HMGCS2P54868 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC22.3■■□□□ 1.16
HMGCS2P54868 AP000523.1-201ENST00000398242 1049 ntBASIC22.3■■□□□ 1.16
HMGCS2P54868 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC22.3■■□□□ 1.16
HMGCS2P54868 PTK2-216ENST00000519881 863 ntTSL 3 BASIC22.3■■□□□ 1.16
HMGCS2P54868 VENTXP5-201ENST00000523979 775 ntBASIC22.3■■□□□ 1.16
HMGCS2P54868 CD81-212ENST00000526072 1172 ntTSL 5 BASIC22.3■■□□□ 1.16
HMGCS2P54868 GCSHP2-201ENST00000560971 527 ntBASIC22.3■■□□□ 1.16
HMGCS2P54868 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC22.3■■□□□ 1.16
HMGCS2P54868 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC22.3■■□□□ 1.16
HMGCS2P54868 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC22.3■■□□□ 1.16
HMGCS2P54868 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC22.3■■□□□ 1.16
HMGCS2P54868 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC22.3■■□□□ 1.16
HMGCS2P54868 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
HMGCS2P54868 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC22.3■■□□□ 1.16
HMGCS2P54868 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
HMGCS2P54868 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC22.29■■□□□ 1.16
HMGCS2P54868 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC22.29■■□□□ 1.16
HMGCS2P54868 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
HMGCS2P54868 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
HMGCS2P54868 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
HMGCS2P54868 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
HMGCS2P54868 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC22.29■■□□□ 1.16
HMGCS2P54868 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC22.29■■□□□ 1.16
HMGCS2P54868 MIR4674-201ENST00000582457 87 ntBASIC22.29■■□□□ 1.16
HMGCS2P54868 AC083849.1-201ENST00000615227 514 ntBASIC22.29■■□□□ 1.16
HMGCS2P54868 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC22.29■■□□□ 1.16
HMGCS2P54868 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
HMGCS2P54868 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
HMGCS2P54868 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
HMGCS2P54868 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
HMGCS2P54868 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
HMGCS2P54868 TBC1D3P2-202ENST00000577902 1649 ntBASIC22.28■■□□□ 1.16
HMGCS2P54868 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC22.28■■□□□ 1.16
HMGCS2P54868 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
HMGCS2P54868 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
HMGCS2P54868 BUB3-202ENST00000368859 667 ntTSL 3 BASIC22.28■■□□□ 1.16
HMGCS2P54868 DUSP5P1-201ENST00000441325 1139 ntBASIC22.28■■□□□ 1.16
HMGCS2P54868 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
HMGCS2P54868 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC22.28■■□□□ 1.16
HMGCS2P54868 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC22.28■■□□□ 1.16
HMGCS2P54868 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC22.28■■□□□ 1.16
HMGCS2P54868 AL136038.3-201ENST00000561909 1096 ntBASIC22.28■■□□□ 1.16
HMGCS2P54868 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC22.28■■□□□ 1.16
HMGCS2P54868 NEK4P2-201ENST00000580004 1012 ntBASIC22.28■■□□□ 1.16
HMGCS2P54868 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC22.28■■□□□ 1.16
HMGCS2P54868 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC22.28■■□□□ 1.16
HMGCS2P54868 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC22.28■■□□□ 1.16
HMGCS2P54868 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC22.28■■□□□ 1.16
HMGCS2P54868 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
HMGCS2P54868 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC22.28■■□□□ 1.16
HMGCS2P54868 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
HMGCS2P54868 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
HMGCS2P54868 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
HMGCS2P54868 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
HMGCS2P54868 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC22.27■■□□□ 1.16
HMGCS2P54868 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
HMGCS2P54868 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC22.27■■□□□ 1.16
HMGCS2P54868 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
HMGCS2P54868 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
HMGCS2P54868 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC22.27■■□□□ 1.16
HMGCS2P54868 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
HMGCS2P54868 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
HMGCS2P54868 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC22.27■■□□□ 1.16
HMGCS2P54868 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC22.27■■□□□ 1.16
HMGCS2P54868 HCG4P8-203ENST00000443049 980 ntBASIC22.27■■□□□ 1.16
HMGCS2P54868 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC22.27■■□□□ 1.16
HMGCS2P54868 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC22.27■■□□□ 1.16
HMGCS2P54868 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC22.27■■□□□ 1.16
HMGCS2P54868 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC22.27■■□□□ 1.16
HMGCS2P54868 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC22.27■■□□□ 1.16
HMGCS2P54868 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC22.27■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 43.8 ms