Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC20.48■□□□□ 0.87
LHX1P48742 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC20.48■□□□□ 0.87
LHX1P48742 AC145285.6-201ENST00000604632 637 ntBASIC20.48■□□□□ 0.87
LHX1P48742 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC20.48■□□□□ 0.87
LHX1P48742 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC20.48■□□□□ 0.87
LHX1P48742 CYP2D8P-201ENST00000433633 1490 ntBASIC20.48■□□□□ 0.87
LHX1P48742 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
LHX1P48742 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
LHX1P48742 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
LHX1P48742 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
LHX1P48742 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
LHX1P48742 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC20.48■□□□□ 0.87
LHX1P48742 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
LHX1P48742 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
LHX1P48742 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
LHX1P48742 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC20.47■□□□□ 0.87
LHX1P48742 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC20.47■□□□□ 0.87
LHX1P48742 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC20.47■□□□□ 0.87
LHX1P48742 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
LHX1P48742 AC010947.1-201ENST00000623454 693 ntBASIC20.47■□□□□ 0.87
LHX1P48742 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC20.47■□□□□ 0.87
LHX1P48742 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
LHX1P48742 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
LHX1P48742 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
LHX1P48742 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
LHX1P48742 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC20.47■□□□□ 0.87
LHX1P48742 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC20.47■□□□□ 0.87
LHX1P48742 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC20.46■□□□□ 0.87
LHX1P48742 ADM-207ENST00000530439 1839 ntTSL 2 BASIC20.46■□□□□ 0.87
LHX1P48742 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC20.46■□□□□ 0.87
LHX1P48742 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC20.46■□□□□ 0.87
LHX1P48742 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
LHX1P48742 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
LHX1P48742 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
LHX1P48742 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC20.46■□□□□ 0.87
LHX1P48742 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC20.46■□□□□ 0.87
LHX1P48742 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
LHX1P48742 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC20.46■□□□□ 0.87
LHX1P48742 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC20.46■□□□□ 0.87
LHX1P48742 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
LHX1P48742 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC20.46■□□□□ 0.87
LHX1P48742 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC20.46■□□□□ 0.87
LHX1P48742 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
LHX1P48742 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
LHX1P48742 LINC01568-207ENST00000641790 1380 ntBASIC20.46■□□□□ 0.87
LHX1P48742 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.87
LHX1P48742 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
LHX1P48742 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
LHX1P48742 BID-204ENST00000399767 2129 ntTSL 2 BASIC20.45■□□□□ 0.86
LHX1P48742 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
LHX1P48742 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
LHX1P48742 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
LHX1P48742 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
LHX1P48742 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
LHX1P48742 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC20.45■□□□□ 0.86
LHX1P48742 PRR31-201ENST00000371629 978 ntTSL 2 BASIC20.45■□□□□ 0.86
LHX1P48742 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
LHX1P48742 CRAT-202ENST00000393384 973 ntTSL 2 BASIC20.45■□□□□ 0.86
LHX1P48742 PRSS44-201ENST00000515154 1146 ntBASIC20.45■□□□□ 0.86
LHX1P48742 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC20.45■□□□□ 0.86
LHX1P48742 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC20.45■□□□□ 0.86
LHX1P48742 CKBP1-201ENST00000565489 1086 ntBASIC20.45■□□□□ 0.86
LHX1P48742 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC20.45■□□□□ 0.86
LHX1P48742 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC20.45■□□□□ 0.86
LHX1P48742 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
LHX1P48742 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC20.45■□□□□ 0.86
LHX1P48742 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC20.45■□□□□ 0.86
LHX1P48742 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
LHX1P48742 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
LHX1P48742 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
LHX1P48742 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
LHX1P48742 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC20.45■□□□□ 0.86
LHX1P48742 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC20.45■□□□□ 0.86
LHX1P48742 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
LHX1P48742 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC20.44■□□□□ 0.86
LHX1P48742 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
LHX1P48742 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
LHX1P48742 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
LHX1P48742 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
LHX1P48742 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC20.44■□□□□ 0.86
LHX1P48742 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
LHX1P48742 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
LHX1P48742 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
LHX1P48742 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
LHX1P48742 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
LHX1P48742 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC20.44■□□□□ 0.86
LHX1P48742 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC20.44■□□□□ 0.86
LHX1P48742 TSPY14P-201ENST00000303979 915 ntBASIC20.44■□□□□ 0.86
LHX1P48742 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC20.44■□□□□ 0.86
LHX1P48742 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC20.44■□□□□ 0.86
LHX1P48742 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC20.44■□□□□ 0.86
LHX1P48742 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
LHX1P48742 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC20.44■□□□□ 0.86
LHX1P48742 EGLN1P1-201ENST00000531623 762 ntBASIC20.44■□□□□ 0.86
LHX1P48742 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
LHX1P48742 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
LHX1P48742 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC20.44■□□□□ 0.86
LHX1P48742 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC20.44■□□□□ 0.86
LHX1P48742 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC20.44■□□□□ 0.86
LHX1P48742 KRT18P22-201ENST00000402024 1347 ntBASIC20.44■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms