Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC19.26■□□□□ 0.67
XRCC1P18887 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
XRCC1P18887 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC19.25■□□□□ 0.67
XRCC1P18887 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
XRCC1P18887 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
XRCC1P18887 NEFHP1-201ENST00000412845 2629 ntBASIC19.25■□□□□ 0.67
XRCC1P18887 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
XRCC1P18887 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
XRCC1P18887 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
XRCC1P18887 AC093503.3-201ENST00000624917 2352 ntBASIC19.25■□□□□ 0.67
XRCC1P18887 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC19.25■□□□□ 0.67
XRCC1P18887 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC19.25■□□□□ 0.67
XRCC1P18887 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC19.25■□□□□ 0.67
XRCC1P18887 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
XRCC1P18887 TREX1-205ENST00000625293 1783 ntBASIC19.25■□□□□ 0.67
XRCC1P18887 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
XRCC1P18887 TFP1-202ENST00000475455 1573 ntBASIC19.25■□□□□ 0.67
XRCC1P18887 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
XRCC1P18887 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC19.25■□□□□ 0.67
XRCC1P18887 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
XRCC1P18887 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
XRCC1P18887 MDFI-202ENST00000373050 809 ntTSL 2 BASIC19.25■□□□□ 0.67
XRCC1P18887 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
XRCC1P18887 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC19.25■□□□□ 0.67
XRCC1P18887 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
XRCC1P18887 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC19.25■□□□□ 0.67
XRCC1P18887 AL049637.2-201ENST00000641778 930 ntBASIC19.25■□□□□ 0.67
XRCC1P18887 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
XRCC1P18887 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC19.25■□□□□ 0.67
XRCC1P18887 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
XRCC1P18887 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
XRCC1P18887 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
XRCC1P18887 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
XRCC1P18887 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
XRCC1P18887 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
XRCC1P18887 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
XRCC1P18887 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
XRCC1P18887 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
XRCC1P18887 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
XRCC1P18887 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC19.25■□□□□ 0.67
XRCC1P18887 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
XRCC1P18887 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
XRCC1P18887 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
XRCC1P18887 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC19.24■□□□□ 0.67
XRCC1P18887 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
XRCC1P18887 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
XRCC1P18887 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
XRCC1P18887 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC19.24■□□□□ 0.67
XRCC1P18887 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
XRCC1P18887 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
XRCC1P18887 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
XRCC1P18887 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC19.24■□□□□ 0.67
XRCC1P18887 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC19.24■□□□□ 0.67
XRCC1P18887 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
XRCC1P18887 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC19.24■□□□□ 0.67
XRCC1P18887 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
XRCC1P18887 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
XRCC1P18887 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
XRCC1P18887 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC19.24■□□□□ 0.67
XRCC1P18887 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
XRCC1P18887 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
XRCC1P18887 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
XRCC1P18887 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
XRCC1P18887 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
XRCC1P18887 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
XRCC1P18887 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC19.23■□□□□ 0.67
XRCC1P18887 BX119927.1-201ENST00000636596 1552 ntBASIC19.23■□□□□ 0.67
XRCC1P18887 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
XRCC1P18887 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
XRCC1P18887 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
XRCC1P18887 AC018553.1-201ENST00000616682 1458 ntBASIC19.23■□□□□ 0.67
XRCC1P18887 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC19.23■□□□□ 0.67
XRCC1P18887 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
XRCC1P18887 PHGDH-210ENST00000641115 1638 ntBASIC19.23■□□□□ 0.67
XRCC1P18887 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC19.23■□□□□ 0.67
XRCC1P18887 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
XRCC1P18887 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC19.23■□□□□ 0.67
XRCC1P18887 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
XRCC1P18887 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC19.23■□□□□ 0.67
XRCC1P18887 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC19.23■□□□□ 0.67
XRCC1P18887 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
XRCC1P18887 CD37-204ENST00000535669 1674 ntTSL 2 BASIC19.23■□□□□ 0.67
XRCC1P18887 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
XRCC1P18887 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC19.23■□□□□ 0.67
XRCC1P18887 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
XRCC1P18887 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
XRCC1P18887 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
XRCC1P18887 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
XRCC1P18887 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
XRCC1P18887 HTR7P1-201ENST00000538670 1336 ntBASIC19.23■□□□□ 0.67
XRCC1P18887 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
XRCC1P18887 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
XRCC1P18887 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
XRCC1P18887 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC19.22■□□□□ 0.67
XRCC1P18887 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC19.22■□□□□ 0.67
XRCC1P18887 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC19.22■□□□□ 0.67
XRCC1P18887 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC19.22■□□□□ 0.67
XRCC1P18887 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
XRCC1P18887 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
XRCC1P18887 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms