Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
HMGA1P17096 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
HMGA1P17096 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
HMGA1P17096 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
HMGA1P17096 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
HMGA1P17096 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
HMGA1P17096 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
HMGA1P17096 AK4P3-201ENST00000418260 669 ntBASIC20.06■□□□□ 0.8
HMGA1P17096 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC20.06■□□□□ 0.8
HMGA1P17096 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC20.06■□□□□ 0.8
HMGA1P17096 AC139887.4-201ENST00000607877 719 ntBASIC20.06■□□□□ 0.8
HMGA1P17096 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC20.06■□□□□ 0.8
HMGA1P17096 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
HMGA1P17096 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC20.06■□□□□ 0.8
HMGA1P17096 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC20.06■□□□□ 0.8
HMGA1P17096 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
HMGA1P17096 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
HMGA1P17096 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC20.05■□□□□ 0.8
HMGA1P17096 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
HMGA1P17096 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
HMGA1P17096 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
HMGA1P17096 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
HMGA1P17096 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
HMGA1P17096 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
HMGA1P17096 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC20.05■□□□□ 0.8
HMGA1P17096 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC20.05■□□□□ 0.8
HMGA1P17096 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC20.05■□□□□ 0.8
HMGA1P17096 GUK1-204ENST00000366721 689 ntTSL 3 BASIC20.05■□□□□ 0.8
HMGA1P17096 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC20.05■□□□□ 0.8
HMGA1P17096 CD70-202ENST00000423145 881 ntTSL 2 BASIC20.05■□□□□ 0.8
HMGA1P17096 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
HMGA1P17096 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC20.05■□□□□ 0.8
HMGA1P17096 TPM1-226ENST00000560959 925 ntTSL 2 BASIC20.05■□□□□ 0.8
HMGA1P17096 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC20.05■□□□□ 0.8
HMGA1P17096 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC20.05■□□□□ 0.8
HMGA1P17096 AC141257.4-201ENST00000634557 245 ntBASIC20.05■□□□□ 0.8
HMGA1P17096 AC136944.6-201ENST00000634818 245 ntBASIC20.05■□□□□ 0.8
HMGA1P17096 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC20.05■□□□□ 0.8
HMGA1P17096 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
HMGA1P17096 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
HMGA1P17096 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC20.05■□□□□ 0.8
HMGA1P17096 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
HMGA1P17096 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
HMGA1P17096 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC20.05■□□□□ 0.8
HMGA1P17096 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
HMGA1P17096 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
HMGA1P17096 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HMGA1P17096 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC20.04■□□□□ 0.8
HMGA1P17096 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
HMGA1P17096 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HMGA1P17096 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HMGA1P17096 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
HMGA1P17096 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
HMGA1P17096 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HMGA1P17096 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC20.04■□□□□ 0.8
HMGA1P17096 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
HMGA1P17096 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
HMGA1P17096 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC20.04■□□□□ 0.8
HMGA1P17096 AC063952.2-201ENST00000498792 1227 ntBASIC20.04■□□□□ 0.8
HMGA1P17096 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC20.04■□□□□ 0.8
HMGA1P17096 RMI2-205ENST00000576027 818 ntTSL 2 BASIC20.04■□□□□ 0.8
HMGA1P17096 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC20.04■□□□□ 0.8
HMGA1P17096 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
HMGA1P17096 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC20.04■□□□□ 0.8
HMGA1P17096 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC20.04■□□□□ 0.8
HMGA1P17096 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HMGA1P17096 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HMGA1P17096 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
HMGA1P17096 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HMGA1P17096 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
HMGA1P17096 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
HMGA1P17096 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
HMGA1P17096 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
HMGA1P17096 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
HMGA1P17096 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
HMGA1P17096 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
HMGA1P17096 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC20.03■□□□□ 0.8
HMGA1P17096 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
HMGA1P17096 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
HMGA1P17096 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
HMGA1P17096 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
HMGA1P17096 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
HMGA1P17096 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
HMGA1P17096 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC20.03■□□□□ 0.8
HMGA1P17096 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
HMGA1P17096 TSPY23P-201ENST00000440136 739 ntBASIC20.03■□□□□ 0.8
HMGA1P17096 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC20.03■□□□□ 0.8
HMGA1P17096 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
HMGA1P17096 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
HMGA1P17096 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
HMGA1P17096 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
HMGA1P17096 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
HMGA1P17096 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
HMGA1P17096 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
HMGA1P17096 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
HMGA1P17096 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
HMGA1P17096 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
HMGA1P17096 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC20.02■□□□□ 0.8
HMGA1P17096 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
HMGA1P17096 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC20.02■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms