Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
HOXC4P09017 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HOXC4P09017 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
HOXC4P09017 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC18.86■□□□□ 0.61
HOXC4P09017 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC18.86■□□□□ 0.61
HOXC4P09017 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC18.86■□□□□ 0.61
HOXC4P09017 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HOXC4P09017 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC18.86■□□□□ 0.61
HOXC4P09017 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
HOXC4P09017 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
HOXC4P09017 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HOXC4P09017 TSPY23P-201ENST00000440136 739 ntBASIC18.86■□□□□ 0.61
HOXC4P09017 ATP5G1P1-201ENST00000448724 379 ntBASIC18.86■□□□□ 0.61
HOXC4P09017 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HOXC4P09017 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC18.86■□□□□ 0.61
HOXC4P09017 AL138966.2-201ENST00000621997 464 ntBASIC18.86■□□□□ 0.61
HOXC4P09017 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
HOXC4P09017 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC18.86■□□□□ 0.61
HOXC4P09017 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HOXC4P09017 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC18.86■□□□□ 0.61
HOXC4P09017 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
HOXC4P09017 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HOXC4P09017 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
HOXC4P09017 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
HOXC4P09017 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC18.85■□□□□ 0.61
HOXC4P09017 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
HOXC4P09017 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
HOXC4P09017 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
HOXC4P09017 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
HOXC4P09017 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
HOXC4P09017 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
HOXC4P09017 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
HOXC4P09017 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
HOXC4P09017 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC18.85■□□□□ 0.61
HOXC4P09017 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC18.85■□□□□ 0.61
HOXC4P09017 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC18.85■□□□□ 0.61
HOXC4P09017 BX664615.1-201ENST00000443558 458 ntBASIC18.85■□□□□ 0.61
HOXC4P09017 KRT18P57-201ENST00000443599 1254 ntBASIC18.85■□□□□ 0.61
HOXC4P09017 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC18.85■□□□□ 0.61
HOXC4P09017 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC18.85■□□□□ 0.61
HOXC4P09017 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
HOXC4P09017 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC18.85■□□□□ 0.61
HOXC4P09017 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
HOXC4P09017 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
HOXC4P09017 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC18.85■□□□□ 0.61
HOXC4P09017 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
HOXC4P09017 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
HOXC4P09017 SDHAP1-207ENST00000440850 2000 ntBASIC18.84■□□□□ 0.61
HOXC4P09017 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
HOXC4P09017 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
HOXC4P09017 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC18.84■□□□□ 0.61
HOXC4P09017 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
HOXC4P09017 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
HOXC4P09017 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
HOXC4P09017 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
HOXC4P09017 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC18.84■□□□□ 0.61
HOXC4P09017 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC18.84■□□□□ 0.61
HOXC4P09017 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
HOXC4P09017 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
HOXC4P09017 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
HOXC4P09017 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
HOXC4P09017 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC18.84■□□□□ 0.61
HOXC4P09017 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC18.84■□□□□ 0.61
HOXC4P09017 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
HOXC4P09017 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC18.84■□□□□ 0.61
HOXC4P09017 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC18.84■□□□□ 0.61
HOXC4P09017 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
HOXC4P09017 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
HOXC4P09017 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC18.84■□□□□ 0.61
HOXC4P09017 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC18.84■□□□□ 0.61
HOXC4P09017 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC18.84■□□□□ 0.61
HOXC4P09017 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
HOXC4P09017 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC18.83■□□□□ 0.61
HOXC4P09017 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
HOXC4P09017 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC18.83■□□□□ 0.61
HOXC4P09017 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
HOXC4P09017 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
HOXC4P09017 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC18.83■□□□□ 0.6
HOXC4P09017 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
HOXC4P09017 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
HOXC4P09017 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC18.83■□□□□ 0.6
HOXC4P09017 RBM42-202ENST00000586618 771 ntTSL 3 BASIC18.83■□□□□ 0.6
HOXC4P09017 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
HOXC4P09017 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC18.83■□□□□ 0.6
HOXC4P09017 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
HOXC4P09017 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
HOXC4P09017 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
HOXC4P09017 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
HOXC4P09017 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC18.83■□□□□ 0.6
HOXC4P09017 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC18.83■□□□□ 0.6
HOXC4P09017 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
HOXC4P09017 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
HOXC4P09017 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
HOXC4P09017 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
HOXC4P09017 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
HOXC4P09017 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HOXC4P09017 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
HOXC4P09017 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC18.82■□□□□ 0.6
HOXC4P09017 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC18.82■□□□□ 0.6
HOXC4P09017 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms