Protein–RNA interactions for Protein: O75445

USH2A, Usherin, humanhuman

Predictions only

Length 5,202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH2AO75445 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC8.64□□□□□ -1.03
USH2AO75445 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC8.64□□□□□ -1.03
USH2AO75445 HTR5BP-201ENST00000430851 1154 ntBASIC8.64□□□□□ -1.03
USH2AO75445 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
USH2AO75445 AC073648.2-201ENST00000510116 352 ntBASIC8.64□□□□□ -1.03
USH2AO75445 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC8.64□□□□□ -1.03
USH2AO75445 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC8.64□□□□□ -1.03
USH2AO75445 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
USH2AO75445 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC8.64□□□□□ -1.03
USH2AO75445 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC8.64□□□□□ -1.03
USH2AO75445 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
USH2AO75445 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
USH2AO75445 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC8.64□□□□□ -1.03
USH2AO75445 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC8.64□□□□□ -1.03
USH2AO75445 KRT8P26-201ENST00000534154 1276 ntBASIC8.64□□□□□ -1.03
USH2AO75445 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC8.64□□□□□ -1.03
USH2AO75445 AC009065.1-201ENST00000564055 1225 ntBASIC8.64□□□□□ -1.03
USH2AO75445 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC8.64□□□□□ -1.03
USH2AO75445 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC8.64□□□□□ -1.03
USH2AO75445 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
USH2AO75445 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
USH2AO75445 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC8.64□□□□□ -1.03
USH2AO75445 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC8.64□□□□□ -1.03
USH2AO75445 IGHV3-47-201ENST00000425060 335 ntBASIC8.64□□□□□ -1.03
USH2AO75445 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC8.64□□□□□ -1.03
USH2AO75445 RNPS1P1-201ENST00000507437 918 ntBASIC8.64□□□□□ -1.03
USH2AO75445 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC8.64□□□□□ -1.03
USH2AO75445 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC8.64□□□□□ -1.03
USH2AO75445 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC8.64□□□□□ -1.03
USH2AO75445 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC8.64□□□□□ -1.03
USH2AO75445 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC8.64□□□□□ -1.03
USH2AO75445 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC8.64□□□□□ -1.03
USH2AO75445 KRT8P20-201ENST00000423953 1409 ntBASIC8.64□□□□□ -1.03
USH2AO75445 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC8.63□□□□□ -1.03
USH2AO75445 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC8.63□□□□□ -1.03
USH2AO75445 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
USH2AO75445 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
USH2AO75445 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC8.63□□□□□ -1.03
USH2AO75445 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC8.63□□□□□ -1.03
USH2AO75445 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
USH2AO75445 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC8.63□□□□□ -1.03
USH2AO75445 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC8.63□□□□□ -1.03
USH2AO75445 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC8.63□□□□□ -1.03
USH2AO75445 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC8.63□□□□□ -1.03
USH2AO75445 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC8.63□□□□□ -1.03
USH2AO75445 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC8.63□□□□□ -1.03
USH2AO75445 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC8.63□□□□□ -1.03
USH2AO75445 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
USH2AO75445 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
USH2AO75445 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC8.63□□□□□ -1.03
USH2AO75445 EMD-201ENST00000369835 966 ntTSL 3 BASIC8.63□□□□□ -1.03
USH2AO75445 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC8.63□□□□□ -1.03
USH2AO75445 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC8.63□□□□□ -1.03
USH2AO75445 ECEL1P1-201ENST00000373592 1742 ntBASIC8.63□□□□□ -1.03
USH2AO75445 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
USH2AO75445 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC8.63□□□□□ -1.03
USH2AO75445 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
USH2AO75445 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
USH2AO75445 CSF3-203ENST00000394148 622 ntTSL 3 BASIC8.63□□□□□ -1.03
USH2AO75445 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC8.63□□□□□ -1.03
USH2AO75445 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC8.63□□□□□ -1.03
USH2AO75445 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC8.63□□□□□ -1.03
USH2AO75445 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC8.63□□□□□ -1.03
USH2AO75445 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
USH2AO75445 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC8.63□□□□□ -1.03
USH2AO75445 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC8.63□□□□□ -1.03
USH2AO75445 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC8.63□□□□□ -1.03
USH2AO75445 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC8.63□□□□□ -1.03
USH2AO75445 MED22-202ENST00000371999 987 ntTSL 3 BASIC8.63□□□□□ -1.03
USH2AO75445 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC8.63□□□□□ -1.03
USH2AO75445 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC8.63□□□□□ -1.03
USH2AO75445 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC8.63□□□□□ -1.03
USH2AO75445 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
USH2AO75445 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC8.62□□□□□ -1.03
USH2AO75445 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC8.62□□□□□ -1.03
USH2AO75445 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC8.62□□□□□ -1.03
USH2AO75445 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC8.62□□□□□ -1.03
USH2AO75445 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC8.62□□□□□ -1.03
USH2AO75445 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC8.62□□□□□ -1.03
USH2AO75445 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC8.62□□□□□ -1.03
USH2AO75445 CD63-204ENST00000546939 779 ntTSL 3 BASIC8.62□□□□□ -1.03
USH2AO75445 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC8.62□□□□□ -1.03
USH2AO75445 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC8.62□□□□□ -1.03
USH2AO75445 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC8.62□□□□□ -1.03
USH2AO75445 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC8.62□□□□□ -1.03
USH2AO75445 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC8.62□□□□□ -1.03
USH2AO75445 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC8.62□□□□□ -1.03
USH2AO75445 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC8.62□□□□□ -1.03
USH2AO75445 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC8.62□□□□□ -1.03
USH2AO75445 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC8.62□□□□□ -1.03
USH2AO75445 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC8.62□□□□□ -1.03
USH2AO75445 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC8.62□□□□□ -1.03
USH2AO75445 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC8.62□□□□□ -1.03
USH2AO75445 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC8.62□□□□□ -1.03
USH2AO75445 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC8.62□□□□□ -1.03
USH2AO75445 AC024243.1-201ENST00000609234 778 ntBASIC8.62□□□□□ -1.03
USH2AO75445 SPEG-225ENST00000617028 815 ntTSL 5 BASIC8.62□□□□□ -1.03
USH2AO75445 FAM215A-202ENST00000632077 792 ntBASIC8.62□□□□□ -1.03
USH2AO75445 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC8.62□□□□□ -1.03
USH2AO75445 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC8.62□□□□□ -1.03
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms