Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC19.36■□□□□ 0.69
SHOX2O60902 SAPCD2P1-201ENST00000395413 1184 ntBASIC19.36■□□□□ 0.69
SHOX2O60902 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
SHOX2O60902 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
SHOX2O60902 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SHOX2O60902 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC19.36■□□□□ 0.69
SHOX2O60902 IGHV3-19-201ENST00000521488 291 ntBASIC19.36■□□□□ 0.69
SHOX2O60902 AC233992.3-201ENST00000607491 485 ntBASIC19.36■□□□□ 0.69
SHOX2O60902 AL136162.1-201ENST00000607711 1078 ntBASIC19.36■□□□□ 0.69
SHOX2O60902 AL356652.1-201ENST00000615962 565 ntBASIC19.36■□□□□ 0.69
SHOX2O60902 AC105233.4-201ENST00000642045 216 ntBASIC19.36■□□□□ 0.69
SHOX2O60902 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SHOX2O60902 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC19.36■□□□□ 0.69
SHOX2O60902 PHGDH-210ENST00000641115 1638 ntBASIC19.36■□□□□ 0.69
SHOX2O60902 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SHOX2O60902 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
SHOX2O60902 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SHOX2O60902 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
SHOX2O60902 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC19.35■□□□□ 0.69
SHOX2O60902 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SHOX2O60902 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC19.35■□□□□ 0.69
SHOX2O60902 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC19.35■□□□□ 0.69
SHOX2O60902 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SHOX2O60902 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC19.35■□□□□ 0.69
SHOX2O60902 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC19.35■□□□□ 0.69
SHOX2O60902 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SHOX2O60902 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SHOX2O60902 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SHOX2O60902 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SHOX2O60902 MFF-208ENST00000409616 1247 ntTSL 5 BASIC19.35■□□□□ 0.69
SHOX2O60902 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC19.35■□□□□ 0.69
SHOX2O60902 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC19.35■□□□□ 0.69
SHOX2O60902 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC19.35■□□□□ 0.69
SHOX2O60902 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SHOX2O60902 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SHOX2O60902 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC19.35■□□□□ 0.69
SHOX2O60902 AC120498.10-201ENST00000621827 505 ntBASIC19.35■□□□□ 0.69
SHOX2O60902 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SHOX2O60902 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SHOX2O60902 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SHOX2O60902 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC19.34■□□□□ 0.69
SHOX2O60902 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC19.34■□□□□ 0.69
SHOX2O60902 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SHOX2O60902 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SHOX2O60902 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SHOX2O60902 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SHOX2O60902 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SHOX2O60902 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SHOX2O60902 NAA20-201ENST00000310450 920 ntTSL 2 BASIC19.34■□□□□ 0.69
SHOX2O60902 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SHOX2O60902 LHPP-203ENST00000392757 840 ntTSL 3 BASIC19.34■□□□□ 0.69
SHOX2O60902 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
SHOX2O60902 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC19.34■□□□□ 0.69
SHOX2O60902 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SHOX2O60902 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SHOX2O60902 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC19.34■□□□□ 0.69
SHOX2O60902 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SHOX2O60902 AC138907.5-202ENST00000569484 235 ntBASIC19.34■□□□□ 0.69
SHOX2O60902 AC008764.7-201ENST00000593779 1081 ntBASIC19.34■□□□□ 0.69
SHOX2O60902 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SHOX2O60902 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
SHOX2O60902 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SHOX2O60902 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
SHOX2O60902 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
SHOX2O60902 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC19.33■□□□□ 0.69
SHOX2O60902 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
SHOX2O60902 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC19.33■□□□□ 0.69
SHOX2O60902 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
SHOX2O60902 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
SHOX2O60902 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
SHOX2O60902 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
SHOX2O60902 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC19.33■□□□□ 0.69
SHOX2O60902 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.69
SHOX2O60902 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC19.33■□□□□ 0.69
SHOX2O60902 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC19.33■□□□□ 0.69
SHOX2O60902 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SHOX2O60902 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
SHOX2O60902 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
SHOX2O60902 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
SHOX2O60902 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
SHOX2O60902 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
SHOX2O60902 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
SHOX2O60902 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC19.33■□□□□ 0.68
SHOX2O60902 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SHOX2O60902 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
SHOX2O60902 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC19.33■□□□□ 0.68
SHOX2O60902 AL139384.1-201ENST00000612143 3047 ntBASIC19.33■□□□□ 0.68
SHOX2O60902 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC19.33■□□□□ 0.68
SHOX2O60902 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SHOX2O60902 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC19.32■□□□□ 0.68
SHOX2O60902 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
SHOX2O60902 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC19.32■□□□□ 0.68
SHOX2O60902 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
SHOX2O60902 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
SHOX2O60902 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
SHOX2O60902 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
SHOX2O60902 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
SHOX2O60902 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
SHOX2O60902 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC19.32■□□□□ 0.68
SHOX2O60902 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC19.32■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 16.7 ms