Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC21.72■■□□□ 1.07
MSH4O15457 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC21.72■■□□□ 1.07
MSH4O15457 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC21.72■■□□□ 1.07
MSH4O15457 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
MSH4O15457 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC21.72■■□□□ 1.07
MSH4O15457 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
MSH4O15457 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
MSH4O15457 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC21.72■■□□□ 1.07
MSH4O15457 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
MSH4O15457 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
MSH4O15457 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
MSH4O15457 MMP23A-201ENST00000234610 1017 ntBASIC21.71■■□□□ 1.07
MSH4O15457 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
MSH4O15457 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
MSH4O15457 AC087499.1-201ENST00000418141 1075 ntBASIC21.71■■□□□ 1.07
MSH4O15457 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC21.71■■□□□ 1.07
MSH4O15457 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC21.71■■□□□ 1.07
MSH4O15457 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC21.71■■□□□ 1.07
MSH4O15457 FDX2-206ENST00000492239 773 ntTSL 2 BASIC21.71■■□□□ 1.07
MSH4O15457 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC21.71■■□□□ 1.07
MSH4O15457 AC097488.1-201ENST00000507834 756 ntBASIC21.71■■□□□ 1.07
MSH4O15457 RPS20-210ENST00000523936 899 ntTSL 2 BASIC21.71■■□□□ 1.07
MSH4O15457 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC21.71■■□□□ 1.07
MSH4O15457 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
MSH4O15457 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
MSH4O15457 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC21.71■■□□□ 1.07
MSH4O15457 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.07
MSH4O15457 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
MSH4O15457 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
MSH4O15457 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
MSH4O15457 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
MSH4O15457 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC21.7■■□□□ 1.06
MSH4O15457 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
MSH4O15457 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC21.7■■□□□ 1.06
MSH4O15457 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
MSH4O15457 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
MSH4O15457 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
MSH4O15457 PRR31-201ENST00000371629 978 ntTSL 2 BASIC21.7■■□□□ 1.06
MSH4O15457 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
MSH4O15457 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC21.7■■□□□ 1.06
MSH4O15457 ARL16-209ENST00000573715 763 ntTSL 3 BASIC21.7■■□□□ 1.06
MSH4O15457 ARL16-211ENST00000576135 694 ntTSL 3 BASIC21.7■■□□□ 1.06
MSH4O15457 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC21.7■■□□□ 1.06
MSH4O15457 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC21.7■■□□□ 1.06
MSH4O15457 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC21.7■■□□□ 1.06
MSH4O15457 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC21.69■■□□□ 1.06
MSH4O15457 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
MSH4O15457 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC21.69■■□□□ 1.06
MSH4O15457 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
MSH4O15457 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC21.69■■□□□ 1.06
MSH4O15457 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
MSH4O15457 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC21.69■■□□□ 1.06
MSH4O15457 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
MSH4O15457 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
MSH4O15457 SLC25A1P4-201ENST00000567977 778 ntBASIC21.69■■□□□ 1.06
MSH4O15457 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC21.69■■□□□ 1.06
MSH4O15457 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC21.69■■□□□ 1.06
MSH4O15457 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC21.69■■□□□ 1.06
MSH4O15457 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
MSH4O15457 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
MSH4O15457 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC21.69■■□□□ 1.06
MSH4O15457 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC21.69■■□□□ 1.06
MSH4O15457 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC21.69■■□□□ 1.06
MSH4O15457 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC21.69■■□□□ 1.06
MSH4O15457 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
MSH4O15457 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
MSH4O15457 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
MSH4O15457 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
MSH4O15457 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC21.68■■□□□ 1.06
MSH4O15457 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
MSH4O15457 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC21.68■■□□□ 1.06
MSH4O15457 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
MSH4O15457 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
MSH4O15457 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
MSH4O15457 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
MSH4O15457 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
MSH4O15457 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC21.68■■□□□ 1.06
MSH4O15457 CRYGFP-201ENST00000418459 633 ntBASIC21.68■■□□□ 1.06
MSH4O15457 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
MSH4O15457 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC21.68■■□□□ 1.06
MSH4O15457 AP005242.2-201ENST00000580065 1175 ntBASIC21.68■■□□□ 1.06
MSH4O15457 GRAMD4P8-201ENST00000605465 1115 ntBASIC21.68■■□□□ 1.06
MSH4O15457 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC21.68■■□□□ 1.06
MSH4O15457 GLDC-219ENST00000640208 420 ntTSL 2 BASIC21.68■■□□□ 1.06
MSH4O15457 AC096733.2-201ENST00000609937 1394 ntBASIC21.68■■□□□ 1.06
MSH4O15457 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC21.68■■□□□ 1.06
MSH4O15457 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
MSH4O15457 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
MSH4O15457 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
MSH4O15457 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
MSH4O15457 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC21.68■■□□□ 1.06
MSH4O15457 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC21.68■■□□□ 1.06
MSH4O15457 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
MSH4O15457 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC21.68■■□□□ 1.06
MSH4O15457 AC093484.2-201ENST00000580996 2166 ntBASIC21.68■■□□□ 1.06
MSH4O15457 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC21.68■■□□□ 1.06
MSH4O15457 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC21.67■■□□□ 1.06
MSH4O15457 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC21.67■■□□□ 1.06
MSH4O15457 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC21.67■■□□□ 1.06
MSH4O15457 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC21.67■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 67.7 ms