Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
CBX4O00257 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CBX4O00257 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
CBX4O00257 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC19.76■□□□□ 0.75
CBX4O00257 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
CBX4O00257 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CBX4O00257 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC19.75■□□□□ 0.75
CBX4O00257 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CBX4O00257 AL158211.5-201ENST00000623583 2518 ntBASIC19.75■□□□□ 0.75
CBX4O00257 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC19.75■□□□□ 0.75
CBX4O00257 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC19.75■□□□□ 0.75
CBX4O00257 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CBX4O00257 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC19.75■□□□□ 0.75
CBX4O00257 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC19.75■□□□□ 0.75
CBX4O00257 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC19.75■□□□□ 0.75
CBX4O00257 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC19.75■□□□□ 0.75
CBX4O00257 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC19.75■□□□□ 0.75
CBX4O00257 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
CBX4O00257 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CBX4O00257 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
CBX4O00257 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CBX4O00257 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC19.75■□□□□ 0.75
CBX4O00257 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CBX4O00257 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CBX4O00257 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
CBX4O00257 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC19.74■□□□□ 0.75
CBX4O00257 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CBX4O00257 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC19.74■□□□□ 0.75
CBX4O00257 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
CBX4O00257 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CBX4O00257 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
CBX4O00257 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CBX4O00257 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
CBX4O00257 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC19.74■□□□□ 0.75
CBX4O00257 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC19.74■□□□□ 0.75
CBX4O00257 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC19.74■□□□□ 0.75
CBX4O00257 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC19.74■□□□□ 0.75
CBX4O00257 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CBX4O00257 AC116562.2-201ENST00000507042 360 ntBASIC19.74■□□□□ 0.75
CBX4O00257 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CBX4O00257 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC19.74■□□□□ 0.75
CBX4O00257 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC19.74■□□□□ 0.75
CBX4O00257 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC19.74■□□□□ 0.75
CBX4O00257 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CBX4O00257 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC19.74■□□□□ 0.75
CBX4O00257 SNX21-213ENST00000614929 587 ntTSL 5 BASIC19.74■□□□□ 0.75
CBX4O00257 MIR6786-201ENST00000616843 113 ntBASIC19.74■□□□□ 0.75
CBX4O00257 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC19.74■□□□□ 0.75
CBX4O00257 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CBX4O00257 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
CBX4O00257 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC19.74■□□□□ 0.75
CBX4O00257 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CBX4O00257 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
CBX4O00257 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CBX4O00257 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CBX4O00257 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC19.74■□□□□ 0.75
CBX4O00257 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CBX4O00257 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
CBX4O00257 FSCN1P1-201ENST00000568912 1481 ntBASIC19.73■□□□□ 0.75
CBX4O00257 SLC25A24-204ENST00000569674 2357 ntBASIC19.73■□□□□ 0.75
CBX4O00257 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC19.73■□□□□ 0.75
CBX4O00257 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CBX4O00257 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CBX4O00257 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CBX4O00257 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC19.73■□□□□ 0.75
CBX4O00257 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC19.73■□□□□ 0.75
CBX4O00257 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC19.73■□□□□ 0.75
CBX4O00257 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CBX4O00257 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CBX4O00257 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC19.73■□□□□ 0.75
CBX4O00257 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC19.73■□□□□ 0.75
CBX4O00257 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
CBX4O00257 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC19.73■□□□□ 0.75
CBX4O00257 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC19.73■□□□□ 0.75
CBX4O00257 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC19.73■□□□□ 0.75
CBX4O00257 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC19.73■□□□□ 0.75
CBX4O00257 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC19.73■□□□□ 0.75
CBX4O00257 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CBX4O00257 ZNF815P-204ENST00000434898 1737 ntBASIC19.73■□□□□ 0.75
CBX4O00257 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CBX4O00257 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CBX4O00257 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CBX4O00257 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC19.73■□□□□ 0.75
CBX4O00257 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC19.73■□□□□ 0.75
CBX4O00257 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CBX4O00257 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
CBX4O00257 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CBX4O00257 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
CBX4O00257 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC19.72■□□□□ 0.75
CBX4O00257 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CBX4O00257 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CBX4O00257 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
CBX4O00257 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
CBX4O00257 B3GAT3P1-201ENST00000471720 806 ntBASIC19.72■□□□□ 0.75
CBX4O00257 AC011506.1-201ENST00000474329 610 ntBASIC19.72■□□□□ 0.75
CBX4O00257 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CBX4O00257 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
CBX4O00257 RCC2P6-201ENST00000526625 1557 ntBASIC19.72■□□□□ 0.75
CBX4O00257 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CBX4O00257 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC19.72■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 63.4 ms