Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
COL6A6A6NMZ7 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL6A6A6NMZ7 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC17.4■□□□□ 0.38
COL6A6A6NMZ7 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC17.4■□□□□ 0.38
COL6A6A6NMZ7 PPIE-208ENST00000470213 927 ntTSL 3 BASIC17.4■□□□□ 0.38
COL6A6A6NMZ7 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC17.4■□□□□ 0.38
COL6A6A6NMZ7 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC17.4■□□□□ 0.38
COL6A6A6NMZ7 Z98882.1-201ENST00000622160 2253 ntBASIC17.4■□□□□ 0.38
COL6A6A6NMZ7 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
COL6A6A6NMZ7 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
COL6A6A6NMZ7 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL6A6A6NMZ7 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC17.4■□□□□ 0.38
COL6A6A6NMZ7 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
COL6A6A6NMZ7 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
COL6A6A6NMZ7 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL6A6A6NMZ7 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
COL6A6A6NMZ7 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL6A6A6NMZ7 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL6A6A6NMZ7 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL6A6A6NMZ7 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL6A6A6NMZ7 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL6A6A6NMZ7 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC17.4■□□□□ 0.38
COL6A6A6NMZ7 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
COL6A6A6NMZ7 TOB2P1-201ENST00000469761 992 ntBASIC17.4■□□□□ 0.38
COL6A6A6NMZ7 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC17.4■□□□□ 0.38
COL6A6A6NMZ7 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC17.4■□□□□ 0.38
COL6A6A6NMZ7 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC17.4■□□□□ 0.38
COL6A6A6NMZ7 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC17.4■□□□□ 0.38
COL6A6A6NMZ7 ABR-217ENST00000572441 563 ntTSL 4 BASIC17.4■□□□□ 0.38
COL6A6A6NMZ7 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
COL6A6A6NMZ7 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC17.4■□□□□ 0.38
COL6A6A6NMZ7 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC17.4■□□□□ 0.38
COL6A6A6NMZ7 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC17.4■□□□□ 0.38
COL6A6A6NMZ7 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC17.4■□□□□ 0.38
COL6A6A6NMZ7 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL6A6A6NMZ7 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
COL6A6A6NMZ7 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC17.39■□□□□ 0.37
COL6A6A6NMZ7 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
COL6A6A6NMZ7 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC17.39■□□□□ 0.37
COL6A6A6NMZ7 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC17.39■□□□□ 0.37
COL6A6A6NMZ7 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
COL6A6A6NMZ7 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
COL6A6A6NMZ7 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC17.39■□□□□ 0.37
COL6A6A6NMZ7 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
COL6A6A6NMZ7 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
COL6A6A6NMZ7 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC17.39■□□□□ 0.37
COL6A6A6NMZ7 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
COL6A6A6NMZ7 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
COL6A6A6NMZ7 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
COL6A6A6NMZ7 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC17.39■□□□□ 0.37
COL6A6A6NMZ7 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC17.39■□□□□ 0.37
COL6A6A6NMZ7 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
COL6A6A6NMZ7 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
COL6A6A6NMZ7 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
COL6A6A6NMZ7 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC17.38■□□□□ 0.37
COL6A6A6NMZ7 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
COL6A6A6NMZ7 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
COL6A6A6NMZ7 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC17.38■□□□□ 0.37
COL6A6A6NMZ7 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC17.38■□□□□ 0.37
COL6A6A6NMZ7 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC17.38■□□□□ 0.37
COL6A6A6NMZ7 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC17.38■□□□□ 0.37
COL6A6A6NMZ7 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
COL6A6A6NMZ7 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC17.38■□□□□ 0.37
COL6A6A6NMZ7 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC17.38■□□□□ 0.37
COL6A6A6NMZ7 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC17.38■□□□□ 0.37
COL6A6A6NMZ7 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC17.38■□□□□ 0.37
COL6A6A6NMZ7 MYB-221ENST00000527615 2381 ntTSL 5 BASIC17.38■□□□□ 0.37
COL6A6A6NMZ7 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
COL6A6A6NMZ7 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC17.38■□□□□ 0.37
COL6A6A6NMZ7 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
COL6A6A6NMZ7 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC17.38■□□□□ 0.37
COL6A6A6NMZ7 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
COL6A6A6NMZ7 PMS2P2-201ENST00000425039 1128 ntBASIC17.38■□□□□ 0.37
COL6A6A6NMZ7 TSPY22P-201ENST00000427496 604 ntBASIC17.38■□□□□ 0.37
COL6A6A6NMZ7 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC17.38■□□□□ 0.37
COL6A6A6NMZ7 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC17.38■□□□□ 0.37
COL6A6A6NMZ7 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC17.38■□□□□ 0.37
COL6A6A6NMZ7 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
COL6A6A6NMZ7 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
COL6A6A6NMZ7 REXO1L6P-202ENST00000619970 1078 ntBASIC17.38■□□□□ 0.37
COL6A6A6NMZ7 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC17.38■□□□□ 0.37
COL6A6A6NMZ7 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
COL6A6A6NMZ7 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC17.38■□□□□ 0.37
COL6A6A6NMZ7 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
COL6A6A6NMZ7 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
COL6A6A6NMZ7 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
COL6A6A6NMZ7 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC17.38■□□□□ 0.37
COL6A6A6NMZ7 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
COL6A6A6NMZ7 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL6A6A6NMZ7 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL6A6A6NMZ7 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
COL6A6A6NMZ7 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
COL6A6A6NMZ7 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
COL6A6A6NMZ7 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC17.37■□□□□ 0.37
COL6A6A6NMZ7 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
COL6A6A6NMZ7 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC17.37■□□□□ 0.37
COL6A6A6NMZ7 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC17.37■□□□□ 0.37
COL6A6A6NMZ7 AL353801.3-201ENST00000609898 542 ntBASIC17.37■□□□□ 0.37
COL6A6A6NMZ7 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL6A6A6NMZ7 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms