Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC26.03■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC26.03■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 AL121906.2-201ENST00000621597 723 ntBASIC26.03■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC26.03■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC26.03■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC26.03■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 AP000974.1-201ENST00000623909 2387 ntBASIC26.03■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC26.03■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC26.03■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC26.02■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC26.02■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC26.02■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC26.02■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC26.02■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC26.02■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 TSPY15P-201ENST00000457163 923 ntBASIC26.02■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC26.02■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC26.02■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC26.02■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC26.02■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC26.02■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC26.02■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC26.01■■□□□ 1.76
SENP3-EIF4A1A0A087X0R7 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC26.01■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC26.01■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC26.01■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC26.01■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 AP001271.2-201ENST00000624018 1556 ntBASIC26.01■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC26■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC26■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC26■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC26■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 AC026396.1-201ENST00000419388 421 ntBASIC26■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC26■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC26■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 Six3os1_6.1-201ENST00000620790 196 ntBASIC26■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC26■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC26■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC26■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC26■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC25.99■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC25.99■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC25.99■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC25.99■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC25.99■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC25.99■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 NME3-204ENST00000563498 920 ntTSL 2 BASIC25.99■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC25.99■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC25.99■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC25.98■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC25.98■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC25.98■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC25.98■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 PTGES2-AS1-201ENST00000443493 2100 ntBASIC25.98■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC25.98■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC25.98■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC25.98■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC25.98■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC25.98■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC25.98■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC25.98■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC25.98■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
SENP3-EIF4A1A0A087X0R7 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
Retrieved 100 of 98,524 protein–RNA pairs in 10.9 ms