Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
VPS35Q96QK1 OR10D3-202ENST00000641351 3561 ntAPPRIS P1 BASIC3.99□□□□□ -1.77
VPS35Q96QK1 OR10D3-203ENST00000641546 3566 ntAPPRIS P1 BASIC3.99□□□□□ -1.77
VPS35Q96QK1 CLCA3P-202ENST00000466454 3412 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
VPS35Q96QK1 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC3.99□□□□□ -1.77
VPS35Q96QK1 ADGRG2-205ENST00000357991 4661 ntAPPRIS P3 TSL 1 (best) BASIC3.99□□□□□ -1.77
VPS35Q96QK1 LYST-201ENST00000389793 13480 ntAPPRIS P1 TSL 5 BASIC3.99□□□□□ -1.77
VPS35Q96QK1 OR2H1-202ENST00000377133 3021 ntAPPRIS P1 BASIC3.99□□□□□ -1.77
VPS35Q96QK1 MTCO1P18-201ENST00000455518 1419 ntBASIC3.99□□□□□ -1.77
VPS35Q96QK1 MFSD8-220ENST00000641243 1422 ntBASIC3.99□□□□□ -1.77
VPS35Q96QK1 UBE2D2-201ENST00000253815 444 ntAPPRIS ALT1 TSL 5 BASIC3.99□□□□□ -1.77
VPS35Q96QK1 IL1RAPL2-201ENST00000344799 1290 ntTSL 5 BASIC3.99□□□□□ -1.77
VPS35Q96QK1 MIR423-201ENST00000362201 94 ntBASIC3.99□□□□□ -1.77
VPS35Q96QK1 RNA5SP391-201ENST00000363456 119 ntBASIC3.99□□□□□ -1.77
VPS35Q96QK1 SYCP3-202ENST00000392924 845 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
VPS35Q96QK1 DEFB133-201ENST00000398721 186 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
VPS35Q96QK1 AC136624.1-201ENST00000400791 413 ntBASIC3.99□□□□□ -1.77
VPS35Q96QK1 PPIAP31-201ENST00000405422 495 ntBASIC3.99□□□□□ -1.77
VPS35Q96QK1 HYKK-202ENST00000408962 847 ntTSL 5 BASIC3.99□□□□□ -1.77
VPS35Q96QK1 JKAMPP1-201ENST00000413804 919 ntBASIC3.99□□□□□ -1.77
VPS35Q96QK1 AC098484.2-201ENST00000414339 601 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
VPS35Q96QK1 LINC01752-201ENST00000417299 438 ntTSL 2 BASIC3.99□□□□□ -1.77
VPS35Q96QK1 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC3.99□□□□□ -1.77
VPS35Q96QK1 EIF2S2P3-201ENST00000428356 999 ntBASIC3.99□□□□□ -1.77
VPS35Q96QK1 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC3.99□□□□□ -1.77
VPS35Q96QK1 ELOCP8-201ENST00000439309 332 ntBASIC3.99□□□□□ -1.77
VPS35Q96QK1 ELOCP15-201ENST00000442090 332 ntBASIC3.99□□□□□ -1.77
VPS35Q96QK1 AC234781.1-201ENST00000444722 459 ntTSL 3 BASIC3.99□□□□□ -1.77
VPS35Q96QK1 LINC00412-201ENST00000444744 420 ntTSL 2 BASIC3.99□□□□□ -1.77
VPS35Q96QK1 AC068135.1-201ENST00000446164 246 ntBASIC3.99□□□□□ -1.77
VPS35Q96QK1 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC3.99□□□□□ -1.77
VPS35Q96QK1 NFU1-207ENST00000462320 558 ntTSL 4 BASIC3.99□□□□□ -1.77
VPS35Q96QK1 PDCD10-216ENST00000492396 814 ntTSL 5 BASIC3.99□□□□□ -1.77
VPS35Q96QK1 TPT1P3-201ENST00000492841 512 ntBASIC3.99□□□□□ -1.77
VPS35Q96QK1 AC025554.1-201ENST00000505641 188 ntBASIC3.99□□□□□ -1.77
VPS35Q96QK1 ZNF131-215ENST00000509931 970 ntTSL 2 BASIC3.99□□□□□ -1.77
VPS35Q96QK1 AC025768.1-201ENST00000510057 267 ntBASIC3.99□□□□□ -1.77
VPS35Q96QK1 AC110792.2-201ENST00000510278 224 ntBASIC3.99□□□□□ -1.77
VPS35Q96QK1 AC092440.1-201ENST00000512563 571 ntTSL 4 BASIC3.99□□□□□ -1.77
VPS35Q96QK1 AC108064.1-201ENST00000513791 460 ntBASIC3.99□□□□□ -1.77
VPS35Q96QK1 RN7SKP283-201ENST00000517197 270 ntBASIC3.99□□□□□ -1.77
VPS35Q96QK1 IGKV2-38-201ENST00000517443 247 ntBASIC3.99□□□□□ -1.77
VPS35Q96QK1 AC105031.3-201ENST00000524359 616 ntTSL 3 BASIC3.99□□□□□ -1.77
VPS35Q96QK1 AL356215.1-201ENST00000528366 1102 ntTSL 2 BASIC3.99□□□□□ -1.77
VPS35Q96QK1 OSBPL9P3-201ENST00000534523 595 ntBASIC3.99□□□□□ -1.77
VPS35Q96QK1 AC009509.2-201ENST00000538640 429 ntTSL 2 BASIC3.99□□□□□ -1.77
VPS35Q96QK1 AC009803.3-201ENST00000548457 540 ntTSL 3 BASIC3.99□□□□□ -1.77
VPS35Q96QK1 MIR3160-1-201ENST00000577972 85 ntBASIC3.99□□□□□ -1.77
VPS35Q96QK1 AP000919.1-202ENST00000581139 1264 ntBASIC3.99□□□□□ -1.77
VPS35Q96QK1 AC010511.1-202ENST00000590229 573 ntTSL 4 BASIC3.99□□□□□ -1.77
VPS35Q96QK1 IGKV1OR2-118-201ENST00000603238 347 ntBASIC3.99□□□□□ -1.77
VPS35Q96QK1 AC010680.3-201ENST00000604215 520 ntBASIC3.99□□□□□ -1.77
VPS35Q96QK1 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC3.99□□□□□ -1.77
VPS35Q96QK1 AC068724.3-201ENST00000625906 87 ntBASIC3.99□□□□□ -1.77
VPS35Q96QK1 OR5T1-201ENST00000641368 1118 ntAPPRIS P1 BASIC3.99□□□□□ -1.77
VPS35Q96QK1 RNMT-203ENST00000543302 1849 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
VPS35Q96QK1 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
VPS35Q96QK1 TMEM161BP1-201ENST00000457388 1457 ntBASIC3.98□□□□□ -1.77
VPS35Q96QK1 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
VPS35Q96QK1 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC3.98□□□□□ -1.77
VPS35Q96QK1 LINC01619-203ENST00000549802 2169 ntTSL 2 BASIC3.98□□□□□ -1.77
VPS35Q96QK1 RNU6-543P-201ENST00000362576 108 ntBASIC3.98□□□□□ -1.77
VPS35Q96QK1 RNU6-650P-201ENST00000365658 111 ntBASIC3.98□□□□□ -1.77
VPS35Q96QK1 KRTAP19-8-201ENST00000382822 318 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
VPS35Q96QK1 MIR1251-201ENST00000408552 70 ntBASIC3.98□□□□□ -1.77
VPS35Q96QK1 SNORA3C-201ENST00000408792 125 ntBASIC3.98□□□□□ -1.77
VPS35Q96QK1 HMGB3P31-201ENST00000413333 595 ntBASIC3.98□□□□□ -1.77
VPS35Q96QK1 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC3.98□□□□□ -1.77
VPS35Q96QK1 CR769775.2-201ENST00000417850 891 ntTSL 3 BASIC3.98□□□□□ -1.77
VPS35Q96QK1 PCDH9-AS2-201ENST00000419371 538 ntTSL 3 BASIC3.98□□□□□ -1.77
VPS35Q96QK1 AL353801.1-201ENST00000425541 425 ntTSL 3 BASIC3.98□□□□□ -1.77
VPS35Q96QK1 AL691449.1-201ENST00000426570 421 ntBASIC3.98□□□□□ -1.77
VPS35Q96QK1 AC009299.3-203ENST00000435692 1096 ntTSL 5 BASIC3.98□□□□□ -1.77
VPS35Q96QK1 DIAPH2-AS1-201ENST00000439759 971 ntTSL 3 BASIC3.98□□□□□ -1.77
VPS35Q96QK1 RPL21P89-201ENST00000444021 467 ntBASIC3.98□□□□□ -1.77
VPS35Q96QK1 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC3.98□□□□□ -1.77
VPS35Q96QK1 GAS5-223ENST00000452197 483 ntTSL 3 BASIC3.98□□□□□ -1.77
VPS35Q96QK1 HMGB1P21-201ENST00000502313 581 ntBASIC3.98□□□□□ -1.77
VPS35Q96QK1 LINC00491-204ENST00000513815 582 ntTSL 4 BASIC3.98□□□□□ -1.77
VPS35Q96QK1 RN7SKP82-201ENST00000516786 223 ntBASIC3.98□□□□□ -1.77
VPS35Q96QK1 LINC01339-203ENST00000519336 561 ntTSL 3 BASIC3.98□□□□□ -1.77
VPS35Q96QK1 AC090993.1-201ENST00000522460 582 ntTSL 3 BASIC3.98□□□□□ -1.77
VPS35Q96QK1 AC139103.1-201ENST00000534696 1030 ntBASIC3.98□□□□□ -1.77
VPS35Q96QK1 AC140847.1-201ENST00000538025 534 ntTSL 4 BASIC3.98□□□□□ -1.77
VPS35Q96QK1 PRB1-204ENST00000546254 1170 ntAPPRIS ALT2 TSL 5 BASIC3.98□□□□□ -1.77
VPS35Q96QK1 AL355096.1-201ENST00000553561 447 ntTSL 3 BASIC3.98□□□□□ -1.77
VPS35Q96QK1 ETFRF1-202ENST00000553788 708 ntTSL 3 BASIC3.98□□□□□ -1.77
VPS35Q96QK1 HYKK-203ENST00000563233 734 ntTSL 2 BASIC3.98□□□□□ -1.77
VPS35Q96QK1 AC244505.7-201ENST00000599675 272 ntBASIC3.98□□□□□ -1.77
VPS35Q96QK1 MIR6798-201ENST00000612887 67 ntBASIC3.98□□□□□ -1.77
VPS35Q96QK1 AL161616.2-201ENST00000622001 565 ntTSL 4 BASIC3.98□□□□□ -1.77
VPS35Q96QK1 AC110597.3-202ENST00000583493 3289 ntTSL 5 BASIC3.98□□□□□ -1.77
VPS35Q96QK1 ZNF962P-201ENST00000443465 3140 ntBASIC3.98□□□□□ -1.77
VPS35Q96QK1 OR6Y1-202ENST00000641282 3702 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
VPS35Q96QK1 LINC02532-209ENST00000602934 2464 ntTSL 2 BASIC3.98□□□□□ -1.77
VPS35Q96QK1 AC100871.1-201ENST00000507871 1456 ntBASIC3.98□□□□□ -1.77
VPS35Q96QK1 PIGN-240ENST00000639912 6530 ntTSL 5 BASIC3.97□□□□□ -1.77
VPS35Q96QK1 GPR171-201ENST00000309180 1786 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
VPS35Q96QK1 MIR372-201ENST00000362225 67 ntBASIC3.97□□□□□ -1.77
VPS35Q96QK1 RNU6-792P-201ENST00000363490 107 ntBASIC3.97□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 135 ms