RNA–Protein interactions for RNA: ENST00000413333.1

HMGB3P31-201, Transcript of high mobility group box 3 pseudogene 31, humanhuman

BASIC

Gene HMGB3P31, Length 595 nt, Biotype processed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P31-201ENST00000413333 CHIC1Q5VXU3 224 aa19.31■□□□□ 0.68
HMGB3P31-201ENST00000413333 AEBP2Q6ZN18 517 aaPredicted RBP19.24■□□□□ 0.67
HMGB3P31-201ENST00000413333 PHF23Q9BUL5 403 aaPredicted RBP17.05■□□□□ 0.32
HMGB3P31-201ENST00000413333 SENP3Q9H4L4 574 aaPredicted RBP16.22■□□□□ 0.19
HMGB3P31-201ENST00000413333 PLPPR3Q6T4P5 718 aa15.92■□□□□ 0.14
HMGB3P31-201ENST00000413333 FOXD1Q16676 465 aa15.01□□□□□ -0.01
HMGB3P31-201ENST00000413333 ADRA2BP18089 450 aa14.95□□□□□ -0.02
HMGB3P31-201ENST00000413333 PPP6R1Q9UPN7 881 aa14.89□□□□□ -0.03
HMGB3P31-201ENST00000413333 KCNA4P22459 653 aa14.43□□□□□ -0.1
HMGB3P31-201ENST00000413333 PIAS4Q8N2W9 510 aaPredicted RBP14.31□□□□□ -0.12
HMGB3P31-201ENST00000413333 PPP4R3CPQ6ZMV5 832 aa14.13□□□□□ -0.15
HMGB3P31-201ENST00000413333 EHMT2Q96KQ7 1210 aa14.13□□□□□ -0.15
HMGB3P31-201ENST00000413333 NCBP3Q53F19 620 aaKnown RBP13.9□□□□□ -0.18
HMGB3P31-201ENST00000413333 SLC4A1APQ9BWU0 796 aaKnown RBP13.84□□□□□ -0.19
HMGB3P31-201ENST00000413333 NPM3O75607 178 aaKnown RBP13.7□□□□□ -0.22
HMGB3P31-201ENST00000413333 CSRNP3Q8WYN3 585 aa13.65□□□□□ -0.22
HMGB3P31-201ENST00000413333 SCAF1Q9H7N4 1312 aaKnown RBP13.61□□□□□ -0.23
HMGB3P31-201ENST00000413333 MSH5O43196 834 aa13.6□□□□□ -0.23
HMGB3P31-201ENST00000413333 CNKSR2Q8WXI2 1034 aa13.59□□□□□ -0.23
HMGB3P31-201ENST00000413333 POTEDQ86YR6 584 aa13.53□□□□□ -0.24
HMGB3P31-201ENST00000413333 MAPK8IP2Q13387 824 aaPredicted RBP13.4□□□□□ -0.26
HMGB3P31-201ENST00000413333 ZBTB22O15209 634 aa13.27□□□□□ -0.29
HMGB3P31-201ENST00000413333 RNF216Q9NWF9 866 aaPredicted RBP13.17□□□□□ -0.3
HMGB3P31-201ENST00000413333 FOXD4L1Q9NU39 408 aa13.1□□□□□ -0.31
HMGB3P31-201ENST00000413333 DNAJC5BQ9UF47 199 aa13.08□□□□□ -0.32
HMGB3P31-201ENST00000413333 DMRT2Q9Y5R5 561 aa13.03□□□□□ -0.32
HMGB3P31-201ENST00000413333 HOXD11P31277 338 aaPredicted RBP12.96□□□□□ -0.33
HMGB3P31-201ENST00000413333 SLC4A2P04920 1241 aa12.8□□□□□ -0.36
HMGB3P31-201ENST00000413333 MYCNP04198 464 aaPredicted RBP12.64□□□□□ -0.39
HMGB3P31-201ENST00000413333 DCAF8L1A6NGE4 600 aa12.56□□□□□ -0.4
HMGB3P31-201ENST00000413333 ATXN8OSP0DMR3 200 aa12.54□□□□□ -0.4
HMGB3P31-201ENST00000413333 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.43□□□□□ -0.42
HMGB3P31-201ENST00000413333 FKBP8Q14318 412 aa12.35□□□□□ -0.43
HMGB3P31-201ENST00000413333 ATF5Q9Y2D1 282 aaPredicted RBP12.3□□□□□ -0.44
HMGB3P31-201ENST00000413333 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.26□□□□□ -0.45
HMGB3P31-201ENST00000413333 HNRNPUL2Q1KMD3 747 aaKnown RBP12.26□□□□□ -0.45
HMGB3P31-201ENST00000413333 U3KPZ7 1027 aaPredicted RBP12.26□□□□□ -0.45
HMGB3P31-201ENST00000413333 SAMD1Q6SPF0 538 aaPredicted RBP12.24□□□□□ -0.45
HMGB3P31-201ENST00000413333 RTN4Q9NQC3 1192 aaKnown RBP12.19□□□□□ -0.46
HMGB3P31-201ENST00000413333 AMER1Q5JTC6 1135 aaPredicted RBP12.16□□□□□ -0.46
HMGB3P31-201ENST00000413333 ZNF219Q9P2Y4 722 aaPredicted RBP12.02□□□□□ -0.49
HMGB3P31-201ENST00000413333 APLP2Q06481 763 aa12□□□□□ -0.49
HMGB3P31-201ENST00000413333 SLC24A1O60721 1099 aa11.89□□□□□ -0.51
HMGB3P31-201ENST00000413333 TRHP20396 242 aaPredicted RBP11.83□□□□□ -0.52
HMGB3P31-201ENST00000413333 SPDYE4A6NLX3 237 aa11.79□□□□□ -0.52
HMGB3P31-201ENST00000413333 SPINK5Q9NQ38 1064 aaPredicted RBP11.79□□□□□ -0.52
HMGB3P31-201ENST00000413333 MKRN4PQ13434 485 aaPredicted RBP11.76□□□□□ -0.53
HMGB3P31-201ENST00000413333 CAPN15O75808 1086 aa11.73□□□□□ -0.53
HMGB3P31-201ENST00000413333 FBLN2P98095 1184 aa11.73□□□□□ -0.53
HMGB3P31-201ENST00000413333 POLA2Q14181 598 aa11.72□□□□□ -0.53
HMGB3P31-201ENST00000413333 RNF39Q9H2S5 420 aa11.7□□□□□ -0.54
HMGB3P31-201ENST00000413333 FBXO3Q9UK99 471 aa11.7□□□□□ -0.54
HMGB3P31-201ENST00000413333 CACNB1Q02641 598 aaPredicted RBP11.68□□□□□ -0.54
HMGB3P31-201ENST00000413333 C1QBPQ07021 282 aaKnown RBP11.59□□□□□ -0.55
HMGB3P31-201ENST00000413333 ABCB7O75027 752 aa11.57□□□□□ -0.56
HMGB3P31-201ENST00000413333 PROM2Q8N271 834 aa11.57□□□□□ -0.56
HMGB3P31-201ENST00000413333 VASPP50552 380 aaPredicted RBP11.54□□□□□ -0.56
HMGB3P31-201ENST00000413333 ZBTB12Q9Y330 459 aaPredicted RBP11.5□□□□□ -0.57
HMGB3P31-201ENST00000413333 IFNLR1Q8IU57 520 aaPredicted RBP11.44□□□□□ -0.58
HMGB3P31-201ENST00000413333 DCAF8L2P0C7V8 631 aa11.36□□□□□ -0.59
HMGB3P31-201ENST00000413333 DSG3P32926 999 aa11.35□□□□□ -0.59
HMGB3P31-201ENST00000413333 ZNF692Q9BU19 519 aaPredicted RBP11.35□□□□□ -0.59
HMGB3P31-201ENST00000413333 OSCARQ8IYS5 282 aa11.29□□□□□ -0.6
HMGB3P31-201ENST00000413333 KLHL34Q8N239 644 aa11.29□□□□□ -0.6
HMGB3P31-201ENST00000413333 SPDYE2BA6NHP3 402 aa11.25□□□□□ -0.61
HMGB3P31-201ENST00000413333 SPDYE6P0CI01 402 aa11.25□□□□□ -0.61
HMGB3P31-201ENST00000413333 PKD2Q13563 968 aa11.25□□□□□ -0.61
HMGB3P31-201ENST00000413333 SPDYE2Q495Y8 402 aa11.25□□□□□ -0.61
HMGB3P31-201ENST00000413333 PLCB2Q00722 1185 aa11.24□□□□□ -0.61
HMGB3P31-201ENST00000413333 PABPN1Q86U42 306 aaKnown RBP eCLIP11.22□□□□□ -0.61
HMGB3P31-201ENST00000413333 SPOCK2Q92563 424 aa11.21□□□□□ -0.61
HMGB3P31-201ENST00000413333 STAG3Q9UJ98 1225 aa11.21□□□□□ -0.61
HMGB3P31-201ENST00000413333 PLCD3Q8N3E9 789 aa11.2□□□□□ -0.62
HMGB3P31-201ENST00000413333 SSUH2Q9Y2M2 353 aa11.2□□□□□ -0.62
HMGB3P31-201ENST00000413333 HAP1P54257 671 aaPredicted RBP11.16□□□□□ -0.62
HMGB3P31-201ENST00000413333 MIER1Q8N108 512 aa11.15□□□□□ -0.62
HMGB3P31-201ENST00000413333 ECM2O94769 699 aaPredicted RBP11.13□□□□□ -0.63
HMGB3P31-201ENST00000413333 PLEKHG5O94827 1062 aa11.04□□□□□ -0.64
HMGB3P31-201ENST00000413333 ZBTB4Q9P1Z0 1013 aaPredicted RBP11□□□□□ -0.65
HMGB3P31-201ENST00000413333 CIZ1Q9ULV3 898 aaPredicted RBP11□□□□□ -0.65
HMGB3P31-201ENST00000413333 RGL2O15211 777 aa10.99□□□□□ -0.65
HMGB3P31-201ENST00000413333 BBXQ8WY36 941 aaPredicted RBP10.98□□□□□ -0.65
HMGB3P31-201ENST00000413333 NPM1P06748 294 aaKnown RBP eCLIP10.97□□□□□ -0.65
HMGB3P31-201ENST00000413333 ZBTB47Q9UFB7 747 aaPredicted RBP10.97□□□□□ -0.65
HMGB3P31-201ENST00000413333 PAXIP1Q6ZW49 1069 aaPredicted RBP10.94□□□□□ -0.66
HMGB3P31-201ENST00000413333 CFAP44Q96MT7 982 aa10.94□□□□□ -0.66
HMGB3P31-201ENST00000413333 VSIG10Q8N0Z9 540 aa10.91□□□□□ -0.66
HMGB3P31-201ENST00000413333 CHGAP10645 457 aaKnown RBP10.86□□□□□ -0.67
HMGB3P31-201ENST00000413333 SPRYD3Q8NCJ5 442 aa10.83□□□□□ -0.68
HMGB3P31-201ENST00000413333 BCANQ96GW7 911 aa10.83□□□□□ -0.68
HMGB3P31-201ENST00000413333 TRIM41Q8WV44 630 aa10.81□□□□□ -0.68
HMGB3P31-201ENST00000413333 CLEC11AQ9Y240 323 aa10.81□□□□□ -0.68
HMGB3P31-201ENST00000413333 SPDYE1Q8NFV5 336 aaPredicted RBP10.8□□□□□ -0.68
HMGB3P31-201ENST00000413333 GSE1Q14687 1217 aa10.79□□□□□ -0.68
HMGB3P31-201ENST00000413333 RBM42Q9BTD8 480 aaKnown RBP10.79□□□□□ -0.68
HMGB3P31-201ENST00000413333 KDM2AQ9Y2K7 1162 aa10.79□□□□□ -0.68
HMGB3P31-201ENST00000413333 DCAF8Q5TAQ9 597 aa10.78□□□□□ -0.68
HMGB3P31-201ENST00000413333 AKT1S1Q96B36 256 aa10.77□□□□□ -0.69
HMGB3P31-201ENST00000413333 PRR29P0C7W0 189 aa10.75□□□□□ -0.69
HMGB3P31-201ENST00000413333 NUBP1P53384 320 aa10.75□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 9 ms