Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 TTC39B-206ENST00000507285 2243 ntAPPRIS ALT2 TSL 5 BASIC10.68□□□□□ -0.7
MSH5O43196 FAM69A-202ENST00000613047 2646 ntTSL 4 BASIC10.68□□□□□ -0.7
MSH5O43196 INSIG2-201ENST00000245787 2590 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
MSH5O43196 SMC2-201ENST00000286398 5992 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
MSH5O43196 RXFP1-203ENST00000343542 2130 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
MSH5O43196 AMELY-202ENST00000383036 621 ntTSL 5 BASIC10.68□□□□□ -0.7
MSH5O43196 MIR181C-201ENST00000384881 110 ntBASIC10.68□□□□□ -0.7
MSH5O43196 SMIM2-201ENST00000400419 822 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
MSH5O43196 CYCSP17-201ENST00000407870 315 ntBASIC10.68□□□□□ -0.7
MSH5O43196 ELOCP19-201ENST00000411919 318 ntBASIC10.68□□□□□ -0.7
MSH5O43196 RPL12P10-201ENST00000413498 498 ntBASIC10.68□□□□□ -0.7
MSH5O43196 RPL21P90-201ENST00000415692 466 ntBASIC10.68□□□□□ -0.7
MSH5O43196 Z82209.1-201ENST00000422141 2135 ntBASIC10.68□□□□□ -0.7
MSH5O43196 AC127024.1-201ENST00000490847 418 ntBASIC10.68□□□□□ -0.7
MSH5O43196 HMGB3P16-201ENST00000508037 287 ntBASIC10.68□□□□□ -0.7
MSH5O43196 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC10.68□□□□□ -0.7
MSH5O43196 RNU6-567P-201ENST00000516746 107 ntBASIC10.68□□□□□ -0.7
MSH5O43196 AP000842.2-202ENST00000526211 569 ntTSL 4 BASIC10.68□□□□□ -0.7
MSH5O43196 POLR3GP1-201ENST00000594073 261 ntBASIC10.68□□□□□ -0.7
MSH5O43196 ERRFI1-202ENST00000467067 2097 ntTSL 2 BASIC10.68□□□□□ -0.7
MSH5O43196 TMBIM6-209ENST00000547798 2494 ntAPPRIS ALT2 TSL 2 BASIC10.68□□□□□ -0.7
MSH5O43196 ZNF337-201ENST00000252979 3205 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
MSH5O43196 LINC00347-202ENST00000594461 2371 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
MSH5O43196 EIF4ENIF1-201ENST00000330125 3544 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
MSH5O43196 ZNF214-201ENST00000278314 2681 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
MSH5O43196 SLFN13-204ENST00000526861 6004 ntAPPRIS P1 TSL 5 BASIC10.68□□□□□ -0.7
MSH5O43196 ABCA4-207ENST00000536513 3740 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
MSH5O43196 CYP7A1-201ENST00000301645 2950 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
MSH5O43196 SLC6A16-202ENST00000454748 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC10.68□□□□□ -0.7
MSH5O43196 ODF2L-202ENST00000317336 4376 ntTSL 5 BASIC10.68□□□□□ -0.7
MSH5O43196 ANKRD30BP1-201ENST00000451052 2186 ntBASIC10.67□□□□□ -0.7
MSH5O43196 ABCA9-202ENST00000453985 6116 ntTSL 5 BASIC10.67□□□□□ -0.7
MSH5O43196 LY75-CD302-201ENST00000504764 5650 ntAPPRIS P4 TSL 2 BASIC10.67□□□□□ -0.7
MSH5O43196 NPIPB9-202ENST00000550983 2123 ntAPPRIS P2 TSL 1 (best) BASIC10.67□□□□□ -0.7
MSH5O43196 RHOXF1-AS1-201ENST00000553843 2102 ntTSL 2 BASIC10.67□□□□□ -0.7
MSH5O43196 PRNT-203ENST00000423718 2096 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
MSH5O43196 ELAVL2-203ENST00000380117 2370 ntAPPRIS P3 TSL 1 (best) BASIC10.67□□□□□ -0.7
MSH5O43196 ZRANB1-201ENST00000359653 5695 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
MSH5O43196 ZNF701-201ENST00000301093 2610 ntAPPRIS ALT2 TSL 1 (best) BASIC10.67□□□□□ -0.7
MSH5O43196 AC019197.1-202ENST00000414885 2639 ntTSL 5 BASIC10.67□□□□□ -0.7
MSH5O43196 MAK-202ENST00000354489 3941 ntTSL 5 BASIC10.67□□□□□ -0.7
MSH5O43196 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC10.67□□□□□ -0.7
MSH5O43196 AC018529.3-201ENST00000624212 2254 ntBASIC10.67□□□□□ -0.7
MSH5O43196 PDE4D-210ENST00000503258 2860 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
MSH5O43196 snoU2_19.4-201ENST00000364329 80 ntBASIC10.67□□□□□ -0.7
MSH5O43196 Y_RNA.544-201ENST00000384650 113 ntBASIC10.67□□□□□ -0.7
MSH5O43196 MIR106B-201ENST00000385301 82 ntBASIC10.67□□□□□ -0.7
MSH5O43196 LINC02449-202ENST00000399866 517 ntTSL 3 BASIC10.67□□□□□ -0.7
MSH5O43196 MIR1302-5-201ENST00000408164 150 ntBASIC10.67□□□□□ -0.7
MSH5O43196 LINC00276-201ENST00000417751 596 ntTSL 2 BASIC10.67□□□□□ -0.7
MSH5O43196 LINC00390-201ENST00000432331 340 ntTSL 5 BASIC10.67□□□□□ -0.7
MSH5O43196 AL773572.1-202ENST00000440221 1004 ntTSL 3 BASIC10.67□□□□□ -0.7
MSH5O43196 GGT3P-203ENST00000445651 368 ntTSL 2 BASIC10.67□□□□□ -0.7
MSH5O43196 RPL39P39-201ENST00000455840 151 ntBASIC10.67□□□□□ -0.7
MSH5O43196 AC084017.1-201ENST00000483240 860 ntBASIC10.67□□□□□ -0.7
MSH5O43196 IGKV1D-16-201ENST00000492446 378 ntAPPRIS P1 BASIC10.67□□□□□ -0.7
MSH5O43196 MTND3P25-201ENST00000509243 135 ntBASIC10.67□□□□□ -0.7
MSH5O43196 RN7SKP14-201ENST00000516000 329 ntBASIC10.67□□□□□ -0.7
MSH5O43196 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC10.67□□□□□ -0.7
MSH5O43196 AC021269.2-201ENST00000532318 330 ntBASIC10.67□□□□□ -0.7
MSH5O43196 GSTZ1-216ENST00000556627 919 ntTSL 3 BASIC10.67□□□□□ -0.7
MSH5O43196 AC037198.1-201ENST00000560769 281 ntTSL 3 BASIC10.67□□□□□ -0.7
MSH5O43196 DNM1P34-202ENST00000567850 315 ntBASIC10.67□□□□□ -0.7
MSH5O43196 MIR3680-2-201ENST00000578247 87 ntBASIC10.67□□□□□ -0.7
MSH5O43196 MIR3680-1-201ENST00000581433 87 ntBASIC10.67□□□□□ -0.7
MSH5O43196 LINC00663-206ENST00000589910 732 ntTSL 2 BASIC10.67□□□□□ -0.7
MSH5O43196 NIPA1-202ENST00000437912 7613 ntAPPRIS ALT2 TSL 1 (best) BASIC10.67□□□□□ -0.7
MSH5O43196 FASLG-202ENST00000367721 1888 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
MSH5O43196 FGFR2-206ENST00000358487 4255 ntAPPRIS ALT1 TSL 1 (best) BASIC10.67□□□□□ -0.7
MSH5O43196 ADCY10P1-203ENST00000567255 4569 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
MSH5O43196 MEPE-208ENST00000540395 2135 ntAPPRIS ALT2 TSL 4 BASIC10.67□□□□□ -0.7
MSH5O43196 COL24A1-201ENST00000370571 6825 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
MSH5O43196 GALR1-201ENST00000299727 10044 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
MSH5O43196 AL359976.1-201ENST00000418655 3528 ntBASIC10.67□□□□□ -0.7
MSH5O43196 RASSF8-201ENST00000282884 1994 ntAPPRIS P1 TSL 2 BASIC10.66□□□□□ -0.7
MSH5O43196 UBE2V1-201ENST00000340309 2536 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
MSH5O43196 GDPD4-202ENST00000376217 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC10.66□□□□□ -0.7
MSH5O43196 KIF1B-211ENST00000620295 8624 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
MSH5O43196 STAMBP-202ENST00000394070 6691 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
MSH5O43196 GTDC1-203ENST00000392867 2408 ntTSL 5 BASIC10.66□□□□□ -0.7
MSH5O43196 MYOF-201ENST00000358334 6680 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
MSH5O43196 LINC01277-201ENST00000419957 2398 ntTSL 2 BASIC10.66□□□□□ -0.7
MSH5O43196 ASAH1-267ENST00000637991 2399 ntTSL 5 BASIC10.66□□□□□ -0.7
MSH5O43196 AC011287.1-206ENST00000638774 2642 ntTSL 5 BASIC10.66□□□□□ -0.7
MSH5O43196 FAR2-202ENST00000536681 3616 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
MSH5O43196 RN7SKP173-201ENST00000362821 315 ntBASIC10.66□□□□□ -0.7
MSH5O43196 RNU6-1284P-201ENST00000363701 100 ntBASIC10.66□□□□□ -0.7
MSH5O43196 Y_RNA.281-201ENST00000364774 94 ntBASIC10.66□□□□□ -0.7
MSH5O43196 RNU6-395P-201ENST00000365662 106 ntBASIC10.66□□□□□ -0.7
MSH5O43196 MTERF4-204ENST00000406593 802 ntTSL 2 BASIC10.66□□□□□ -0.7
MSH5O43196 SNORD3J-201ENST00000408473 190 ntBASIC10.66□□□□□ -0.7
MSH5O43196 RPS6KA2-IT1-201ENST00000416770 579 ntTSL 3 BASIC10.66□□□□□ -0.7
MSH5O43196 AL592078.1-201ENST00000421866 321 ntTSL 3 BASIC10.66□□□□□ -0.7
MSH5O43196 AL160275.3-201ENST00000423876 471 ntBASIC10.66□□□□□ -0.7
MSH5O43196 GAPDHP69-201ENST00000425504 1008 ntBASIC10.66□□□□□ -0.7
MSH5O43196 AC073069.1-201ENST00000428657 441 ntBASIC10.66□□□□□ -0.7
MSH5O43196 AL357552.2-201ENST00000433876 353 ntTSL 5 BASIC10.66□□□□□ -0.7
MSH5O43196 LINC01732-201ENST00000435023 542 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
MSH5O43196 OR7H1P-201ENST00000448965 922 ntBASIC10.66□□□□□ -0.7
MSH5O43196 AC097263.1-201ENST00000496795 606 ntBASIC10.66□□□□□ -0.7
Retrieved 100 of 98,524 protein–RNA pairs in 138.7 ms