Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 AC120349.3-201ENST00000624377 529 ntBASIC4.7□□□□□ -1.66
PTPN9P43378 AC079416.3-201ENST00000624479 549 ntBASIC4.7□□□□□ -1.66
PTPN9P43378 AL049536.1-201ENST00000625043 744 ntBASIC4.7□□□□□ -1.66
PTPN9P43378 AL355306.2-208ENST00000634868 1251 ntTSL 5 BASIC4.7□□□□□ -1.66
PTPN9P43378 NXPH1-205ENST00000602349 1953 ntBASIC4.7□□□□□ -1.66
PTPN9P43378 AL133243.3-201ENST00000617415 3004 ntBASIC4.7□□□□□ -1.66
PTPN9P43378 ZNF645-201ENST00000323684 1519 ntAPPRIS P1 BASIC4.7□□□□□ -1.66
PTPN9P43378 AC053481.2-202ENST00000582394 1500 ntBASIC4.7□□□□□ -1.66
PTPN9P43378 DPP10-204ENST00000409163 3883 ntAPPRIS ALT2 TSL 2 BASIC4.7□□□□□ -1.66
PTPN9P43378 AC007681.1-201ENST00000604271 3438 ntTSL 4 BASIC4.7□□□□□ -1.66
PTPN9P43378 AP005901.5-201ENST00000545779 1796 ntBASIC4.7□□□□□ -1.66
PTPN9P43378 KIAA0586-202ENST00000354386 5226 ntAPPRIS ALT2 TSL 2 BASIC4.7□□□□□ -1.66
PTPN9P43378 AL592148.3-201ENST00000608771 2646 ntBASIC4.7□□□□□ -1.66
PTPN9P43378 SUPT16HP1-201ENST00000537175 3133 ntBASIC4.7□□□□□ -1.66
PTPN9P43378 AC009229.4-201ENST00000623854 1947 ntBASIC4.7□□□□□ -1.66
PTPN9P43378 PSMD6-202ENST00000394431 1349 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
PTPN9P43378 ADGRL3-203ENST00000506700 4838 ntTSL 5 BASIC4.7□□□□□ -1.66
PTPN9P43378 PHKBP1-201ENST00000450951 1951 ntBASIC4.69□□□□□ -1.66
PTPN9P43378 SYCP1-210ENST00000618516 3109 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
PTPN9P43378 MAPK10-235ENST00000638225 8941 ntAPPRIS P2 TSL 1 (best) BASIC4.69□□□□□ -1.66
PTPN9P43378 TES-202ENST00000393481 2763 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
PTPN9P43378 EIF4E3-202ENST00000389826 6083 ntTSL 5 BASIC4.69□□□□□ -1.66
PTPN9P43378 IFNG-201ENST00000229135 1218 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
PTPN9P43378 HMGB1P5-201ENST00000255320 642 ntBASIC4.69□□□□□ -1.66
PTPN9P43378 CSTA-201ENST00000264474 751 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
PTPN9P43378 RNU1-20P-201ENST00000363314 162 ntBASIC4.69□□□□□ -1.66
PTPN9P43378 CNIH4-201ENST00000366856 808 ntAPPRIS ALT1 TSL 2 BASIC4.69□□□□□ -1.66
PTPN9P43378 TMLHE-202ENST00000369439 1248 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
PTPN9P43378 MANSC4-201ENST00000381273 1023 ntAPPRIS P1 TSL 5 BASIC4.69□□□□□ -1.66
PTPN9P43378 AC093719.1-202ENST00000392735 373 ntBASIC4.69□□□□□ -1.66
PTPN9P43378 ESCO2-202ENST00000397418 720 ntTSL 5 BASIC4.69□□□□□ -1.66
PTPN9P43378 EEF1E1-BLOC1S5-201ENST00000397456 768 ntAPPRIS P1 TSL 3 BASIC4.69□□□□□ -1.66
PTPN9P43378 ATP5F1P2-201ENST00000398143 760 ntBASIC4.69□□□□□ -1.66
PTPN9P43378 LINC00427-201ENST00000412722 430 ntTSL 2 BASIC4.69□□□□□ -1.66
PTPN9P43378 AC096559.1-201ENST00000414086 399 ntTSL 2 BASIC4.69□□□□□ -1.66
PTPN9P43378 LINC01676-201ENST00000420901 410 ntTSL 3 BASIC4.69□□□□□ -1.66
PTPN9P43378 AC023469.2-201ENST00000425983 657 ntTSL 5 BASIC4.69□□□□□ -1.66
PTPN9P43378 RPS12P10-201ENST00000427031 377 ntBASIC4.69□□□□□ -1.66
PTPN9P43378 RPL23AP25-201ENST00000430973 463 ntBASIC4.69□□□□□ -1.66
PTPN9P43378 PCDH9-AS3-201ENST00000434073 479 ntTSL 2 BASIC4.69□□□□□ -1.66
PTPN9P43378 ARL4AP3-201ENST00000441452 574 ntBASIC4.69□□□□□ -1.66
PTPN9P43378 AC044781.1-201ENST00000446193 570 ntTSL 3 BASIC4.69□□□□□ -1.66
PTPN9P43378 PTPRG-AS1-202ENST00000466893 823 ntTSL 4 BASIC4.69□□□□□ -1.66
PTPN9P43378 RN7SL354P-201ENST00000469282 294 ntBASIC4.69□□□□□ -1.66
PTPN9P43378 SOX2-OT-207ENST00000476964 606 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
PTPN9P43378 DEFB109F-201ENST00000491870 277 ntBASIC4.69□□□□□ -1.66
PTPN9P43378 AC093292.1-201ENST00000505050 449 ntTSL 3 BASIC4.69□□□□□ -1.66
PTPN9P43378 AC008885.2-201ENST00000509506 930 ntBASIC4.69□□□□□ -1.66
PTPN9P43378 RNU5A-4P-201ENST00000516588 111 ntBASIC4.69□□□□□ -1.66
PTPN9P43378 TBCA-203ENST00000517679 545 ntTSL 3 BASIC4.69□□□□□ -1.66
PTPN9P43378 TEX12-202ENST00000530752 787 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
PTPN9P43378 RAP1B-224ENST00000541216 701 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
PTPN9P43378 AC020612.3-201ENST00000550644 570 ntTSL 2 BASIC4.69□□□□□ -1.66
PTPN9P43378 MTND3P12-201ENST00000559068 328 ntBASIC4.69□□□□□ -1.66
PTPN9P43378 AC009094.1-201ENST00000564443 426 ntBASIC4.69□□□□□ -1.66
PTPN9P43378 AC145350.1-201ENST00000567426 208 ntBASIC4.69□□□□□ -1.66
PTPN9P43378 AC069061.3-201ENST00000582254 823 ntBASIC4.69□□□□□ -1.66
PTPN9P43378 LAMTOR5-AS1-203ENST00000585330 463 ntTSL 2 BASIC4.69□□□□□ -1.66
PTPN9P43378 AC115085.1-201ENST00000588924 229 ntBASIC4.69□□□□□ -1.66
PTPN9P43378 SOX2-OT-224ENST00000595313 716 ntTSL 5 BASIC4.69□□□□□ -1.66
PTPN9P43378 INTS6-AS1-210ENST00000595424 301 ntTSL 5 BASIC4.69□□□□□ -1.66
PTPN9P43378 AC008751.2-201ENST00000597885 980 ntBASIC4.69□□□□□ -1.66
PTPN9P43378 AC008782.1-201ENST00000603386 430 ntBASIC4.69□□□□□ -1.66
PTPN9P43378 AC115286.1-201ENST00000604298 434 ntBASIC4.69□□□□□ -1.66
PTPN9P43378 AC008035.1-201ENST00000607353 448 ntTSL 3 BASIC4.69□□□□□ -1.66
PTPN9P43378 AL355816.1-201ENST00000607951 118 ntBASIC4.69□□□□□ -1.66
PTPN9P43378 MIR6891-201ENST00000618788 93 ntBASIC4.69□□□□□ -1.66
PTPN9P43378 AL158163.2-201ENST00000619110 700 ntBASIC4.69□□□□□ -1.66
PTPN9P43378 AC116563.2-201ENST00000624751 535 ntBASIC4.69□□□□□ -1.66
PTPN9P43378 GABRG2-210ENST00000638772 7669 ntTSL 5 BASIC4.69□□□□□ -1.66
PTPN9P43378 ADAM7-202ENST00000380789 3358 ntAPPRIS ALT2 TSL 5 BASIC4.69□□□□□ -1.66
PTPN9P43378 OR56B2P-202ENST00000641377 2453 ntBASIC4.69□□□□□ -1.66
PTPN9P43378 RIMS1-204ENST00000401910 3542 ntTSL 2 BASIC4.69□□□□□ -1.66
PTPN9P43378 RAP1B-201ENST00000250559 13438 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
PTPN9P43378 OR6Y1-202ENST00000641282 3702 ntAPPRIS P1 BASIC4.69□□□□□ -1.66
PTPN9P43378 ADGRL3-202ENST00000504896 4816 ntTSL 5 BASIC4.69□□□□□ -1.66
PTPN9P43378 CD200R1-204ENST00000471858 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC4.68□□□□□ -1.66
PTPN9P43378 ATP2C1-212ENST00000507488 3579 ntAPPRIS ALT2 TSL 2 BASIC4.68□□□□□ -1.66
PTPN9P43378 AGTR1-205ENST00000461609 1545 ntAPPRIS P1 TSL 3 BASIC4.68□□□□□ -1.66
PTPN9P43378 TATDN1-201ENST00000276692 1018 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
PTPN9P43378 XAGE1A-202ENST00000375600 474 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
PTPN9P43378 XAGE1B-202ENST00000375613 474 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
PTPN9P43378 TEX30-204ENST00000376027 1106 ntTSL 5 BASIC4.68□□□□□ -1.66
PTPN9P43378 OR5L2-201ENST00000378397 936 ntAPPRIS P1 BASIC4.68□□□□□ -1.66
PTPN9P43378 SRY-201ENST00000383070 845 ntAPPRIS P1 BASIC4.68□□□□□ -1.66
PTPN9P43378 RPS3AP23-201ENST00000401762 784 ntBASIC4.68□□□□□ -1.66
PTPN9P43378 NCSTNP1-201ENST00000406229 144 ntBASIC4.68□□□□□ -1.66
PTPN9P43378 RPS16P5-201ENST00000406501 404 ntBASIC4.68□□□□□ -1.66
PTPN9P43378 AL590084.1-201ENST00000407885 387 ntBASIC4.68□□□□□ -1.66
PTPN9P43378 AC073136.2-201ENST00000417282 849 ntBASIC4.68□□□□□ -1.66
PTPN9P43378 AC234782.4-201ENST00000417646 1048 ntBASIC4.68□□□□□ -1.66
PTPN9P43378 AC007435.1-201ENST00000421086 415 ntBASIC4.68□□□□□ -1.66
PTPN9P43378 AC004448.2-201ENST00000422360 586 ntBASIC4.68□□□□□ -1.66
PTPN9P43378 LINC02238-201ENST00000424953 557 ntTSL 5 BASIC4.68□□□□□ -1.66
PTPN9P43378 AL031429.1-201ENST00000426775 749 ntTSL 2 BASIC4.68□□□□□ -1.66
PTPN9P43378 MOB1AP1-201ENST00000430903 535 ntBASIC4.68□□□□□ -1.66
PTPN9P43378 DARS-AS1-206ENST00000446492 488 ntTSL 3 BASIC4.68□□□□□ -1.66
PTPN9P43378 HRAT17-201ENST00000447785 547 ntTSL 4 BASIC4.68□□□□□ -1.66
PTPN9P43378 LINC01878-202ENST00000453965 405 ntTSL 3 BASIC4.68□□□□□ -1.66
PTPN9P43378 AC011979.1-201ENST00000472300 483 ntBASIC4.68□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 81.6 ms