Protein–RNA interactions for Protein: Q95604

HLA-C, HLA class I histocompatibility antigen, Cw-17 alpha chain, humanhuman

Predictions only

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-CQ95604 BTG3-AS1-201ENST00000626994 552 ntTSL 4 BASIC6.96□□□□□ -1.3
HLA-CQ95604 AL049767.1-202ENST00000637826 242 ntBASIC6.96□□□□□ -1.3
HLA-CQ95604 ARMC3-203ENST00000409049 2479 ntAPPRIS ALT2 TSL 1 (best) BASIC6.96□□□□□ -1.3
HLA-CQ95604 MYB-213ENST00000525369 2866 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
HLA-CQ95604 MAP2-203ENST00000361559 2038 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
HLA-CQ95604 PAK5-201ENST00000353224 4500 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.3
HLA-CQ95604 STXBP5-201ENST00000321680 3456 ntAPPRIS ALT1 TSL 5 BASIC6.96□□□□□ -1.3
HLA-CQ95604 DICER1-214ENST00000556045 2776 ntTSL 2 BASIC6.96□□□□□ -1.3
HLA-CQ95604 KCNRG-201ENST00000312942 1527 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.3
HLA-CQ95604 BDNF-212ENST00000525528 4766 ntAPPRIS P1 BASIC6.96□□□□□ -1.3
HLA-CQ95604 IPO11-203ENST00000409534 1725 ntTSL 2 BASIC6.96□□□□□ -1.3
HLA-CQ95604 PTPRR-204ENST00000440835 2818 ntAPPRIS ALT2 TSL 1 (best) BASIC6.95□□□□□ -1.3
HLA-CQ95604 FGD4-202ENST00000427716 8242 ntAPPRIS P1 TSL 2 BASIC6.95□□□□□ -1.3
HLA-CQ95604 C11orf65-208ENST00000615746 2711 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
HLA-CQ95604 CLSTN2-201ENST00000458420 14202 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
HLA-CQ95604 HAVCR2-201ENST00000307851 2907 ntAPPRIS P2 TSL 1 (best) BASIC6.95□□□□□ -1.3
HLA-CQ95604 AC093752.1-213ENST00000503038 2376 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
HLA-CQ95604 PEX13-201ENST00000295030 4470 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
HLA-CQ95604 MECOM-217ENST00000494292 3939 ntAPPRIS ALT2 TSL 5 BASIC6.95□□□□□ -1.3
HLA-CQ95604 TPK1-207ENST00000538212 2243 ntTSL 2 BASIC6.95□□□□□ -1.3
HLA-CQ95604 PHLDB2-202ENST00000393925 5543 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
HLA-CQ95604 RTL3-201ENST00000321110 2648 ntAPPRIS P1 TSL 2 BASIC6.95□□□□□ -1.3
HLA-CQ95604 FREM2-201ENST00000280481 16070 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
HLA-CQ95604 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
HLA-CQ95604 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
HLA-CQ95604 RNU6-238P-201ENST00000363313 106 ntBASIC6.95□□□□□ -1.3
HLA-CQ95604 RNU6-179P-201ENST00000363350 107 ntBASIC6.95□□□□□ -1.3
HLA-CQ95604 CD84-204ENST00000368048 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC6.95□□□□□ -1.3
HLA-CQ95604 TRBV23-1-201ENST00000390396 347 ntAPPRIS P1 BASIC6.95□□□□□ -1.3
HLA-CQ95604 UBE2V1P2-201ENST00000397758 440 ntBASIC6.95□□□□□ -1.3
HLA-CQ95604 MIR1178-201ENST00000408396 91 ntBASIC6.95□□□□□ -1.3
HLA-CQ95604 AC064875.1-202ENST00000421112 561 ntTSL 4 BASIC6.95□□□□□ -1.3
HLA-CQ95604 AL590233.1-201ENST00000430017 456 ntBASIC6.95□□□□□ -1.3
HLA-CQ95604 AL359265.2-201ENST00000434367 631 ntBASIC6.95□□□□□ -1.3
HLA-CQ95604 ATP5LP2-201ENST00000440646 311 ntBASIC6.95□□□□□ -1.3
HLA-CQ95604 LAMTOR5-AS1-201ENST00000444238 881 ntTSL 5 BASIC6.95□□□□□ -1.3
HLA-CQ95604 KRTAP21-3-201ENST00000444335 253 ntAPPRIS P1 BASIC6.95□□□□□ -1.3
HLA-CQ95604 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC6.95□□□□□ -1.3
HLA-CQ95604 RPL23AP43-201ENST00000446445 471 ntBASIC6.95□□□□□ -1.3
HLA-CQ95604 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC6.95□□□□□ -1.3
HLA-CQ95604 LINC02513-201ENST00000503465 500 ntTSL 2 BASIC6.95□□□□□ -1.3
HLA-CQ95604 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC6.95□□□□□ -1.3
HLA-CQ95604 AC087854.1-201ENST00000519706 414 ntBASIC6.95□□□□□ -1.3
HLA-CQ95604 AC022882.1-201ENST00000532142 501 ntBASIC6.95□□□□□ -1.3
HLA-CQ95604 AP002989.1-201ENST00000533459 562 ntTSL 4 BASIC6.95□□□□□ -1.3
HLA-CQ95604 MRPS21P8-201ENST00000569196 235 ntBASIC6.95□□□□□ -1.3
HLA-CQ95604 RN7SL404P-201ENST00000582421 281 ntBASIC6.95□□□□□ -1.3
HLA-CQ95604 CR382285.1-202ENST00000604687 547 ntBASIC6.95□□□□□ -1.3
HLA-CQ95604 AC133644.2-201ENST00000608142 540 ntBASIC6.95□□□□□ -1.3
HLA-CQ95604 AC241377.2-201ENST00000612313 553 ntTSL 4 BASIC6.95□□□□□ -1.3
HLA-CQ95604 PISRT1.1-201ENST00000616930 107 ntBASIC6.95□□□□□ -1.3
HLA-CQ95604 FAM27E2-201ENST00000619668 403 ntBASIC6.95□□□□□ -1.3
HLA-CQ95604 AC099667.1-201ENST00000624222 469 ntBASIC6.95□□□□□ -1.3
HLA-CQ95604 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC6.95□□□□□ -1.3
HLA-CQ95604 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC6.95□□□□□ -1.3
HLA-CQ95604 AL442639.1-201ENST00000625030 1899 ntBASIC6.95□□□□□ -1.3
HLA-CQ95604 ZNF521-203ENST00000538137 4253 ntAPPRIS P1 TSL 2 BASIC6.95□□□□□ -1.3
HLA-CQ95604 RBM25-201ENST00000261973 6910 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
HLA-CQ95604 CSDE1-218ENST00000610726 4312 ntTSL 5 BASIC6.95□□□□□ -1.3
HLA-CQ95604 AC009690.2-201ENST00000570175 3148 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
HLA-CQ95604 AC021078.1-201ENST00000499521 8636 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
HLA-CQ95604 AC032011.1-201ENST00000611703 1549 ntBASIC6.95□□□□□ -1.3
HLA-CQ95604 FLG-AS1-202ENST00000392688 2995 ntTSL 2 BASIC6.95□□□□□ -1.3
HLA-CQ95604 CACNA1D-224ENST00000637424 6856 ntAPPRIS ALT2 TSL 5 BASIC6.95□□□□□ -1.3
HLA-CQ95604 SGCD-202ENST00000435422 9755 ntAPPRIS ALT1 TSL 1 (best) BASIC6.95□□□□□ -1.3
HLA-CQ95604 DYNC1I2-207ENST00000410079 2159 ntTSL 2 BASIC6.95□□□□□ -1.3
HLA-CQ95604 GRIK2-206ENST00000413795 4876 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
HLA-CQ95604 ALS2CR12-201ENST00000286190 1769 ntAPPRIS P3 TSL 1 (best) BASIC6.95□□□□□ -1.3
HLA-CQ95604 ART4-201ENST00000228936 5129 ntAPPRIS P2 TSL 1 (best) BASIC6.95□□□□□ -1.3
HLA-CQ95604 ABCB5-205ENST00000443026 2247 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
HLA-CQ95604 GOLGB1-209ENST00000614479 11115 ntAPPRIS ALT2 TSL 1 (best) BASIC6.95□□□□□ -1.3
HLA-CQ95604 OR5A2-202ENST00000641361 6655 ntAPPRIS P1 BASIC6.95□□□□□ -1.3
HLA-CQ95604 EPHA3-203ENST00000494014 3085 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
HLA-CQ95604 ARHGAP32-203ENST00000524655 8194 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
HLA-CQ95604 ZNF519P1-201ENST00000449011 1626 ntBASIC6.94□□□□□ -1.3
HLA-CQ95604 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC6.94□□□□□ -1.3
HLA-CQ95604 AC005592.1-201ENST00000566527 1640 ntBASIC6.94□□□□□ -1.3
HLA-CQ95604 AL158163.1-201ENST00000603915 1649 ntBASIC6.94□□□□□ -1.3
HLA-CQ95604 LINC01504-201ENST00000436054 2078 ntTSL 2 BASIC6.94□□□□□ -1.3
HLA-CQ95604 DDX46-201ENST00000354283 3821 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
HLA-CQ95604 TDP1-213ENST00000555880 1894 ntTSL 5 BASIC6.94□□□□□ -1.3
HLA-CQ95604 CCDC77-210ENST00000540180 1652 ntAPPRIS ALT2 TSL 2 BASIC6.94□□□□□ -1.3
HLA-CQ95604 LINC00517-202ENST00000554257 3460 ntTSL 2 BASIC6.94□□□□□ -1.3
HLA-CQ95604 ITPR1-205ENST00000456211 9717 ntTSL 1 (best) BASIC6.94□□□□□ -1.3
HLA-CQ95604 RNU6-490P-201ENST00000362985 107 ntBASIC6.94□□□□□ -1.3
HLA-CQ95604 RNU6-1252P-201ENST00000363054 104 ntBASIC6.94□□□□□ -1.3
HLA-CQ95604 Y_RNA.152-201ENST00000363578 100 ntBASIC6.94□□□□□ -1.3
HLA-CQ95604 RNU4-25P-201ENST00000410569 230 ntBASIC6.94□□□□□ -1.3
HLA-CQ95604 RPL21P133-201ENST00000443666 476 ntBASIC6.94□□□□□ -1.3
HLA-CQ95604 AC020550.1-201ENST00000447385 163 ntBASIC6.94□□□□□ -1.3
HLA-CQ95604 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC6.94□□□□□ -1.3
HLA-CQ95604 AC098847.1-201ENST00000473094 348 ntBASIC6.94□□□□□ -1.3
HLA-CQ95604 TRBV1-201ENST00000476502 284 ntBASIC6.94□□□□□ -1.3
HLA-CQ95604 AC058823.1-201ENST00000485315 474 ntBASIC6.94□□□□□ -1.3
HLA-CQ95604 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC6.94□□□□□ -1.3
HLA-CQ95604 AC146944.3-201ENST00000509969 371 ntBASIC6.94□□□□□ -1.3
HLA-CQ95604 Y_RNA.661-201ENST00000516003 99 ntBASIC6.94□□□□□ -1.3
HLA-CQ95604 RNA5SP287-201ENST00000516358 103 ntBASIC6.94□□□□□ -1.3
HLA-CQ95604 ZNF706-212ENST00000520984 782 ntAPPRIS P1 TSL 5 BASIC6.94□□□□□ -1.3
HLA-CQ95604 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC6.94□□□□□ -1.3
Retrieved 100 of 98,524 protein–RNA pairs in 76.3 ms