RNA–Protein interactions for RNA: ENST00000455554.2

LINC02540-201, Transcript of long intergenic non-protein coding RNA 2540, humanhuman

TSL 3 BASIC

Gene LINC02540, Length 570 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC02540-201ENST00000455554 AEBP2Q6ZN18 517 aaPredicted RBP19.79■□□□□ 0.76
LINC02540-201ENST00000455554 CHIC1Q5VXU3 224 aa18.47■□□□□ 0.55
LINC02540-201ENST00000455554 SENP3Q9H4L4 574 aaPredicted RBP16.68■□□□□ 0.26
LINC02540-201ENST00000455554 PHF23Q9BUL5 403 aaPredicted RBP16.54■□□□□ 0.24
LINC02540-201ENST00000455554 FOXD1Q16676 465 aa15.72■□□□□ 0.11
LINC02540-201ENST00000455554 POTEDQ86YR6 584 aa14.74□□□□□ -0.05
LINC02540-201ENST00000455554 PPP6R1Q9UPN7 881 aa14.64□□□□□ -0.07
LINC02540-201ENST00000455554 MSH5O43196 834 aa14.6□□□□□ -0.07
LINC02540-201ENST00000455554 PLPPR3Q6T4P5 718 aa14.59□□□□□ -0.07
LINC02540-201ENST00000455554 PIAS4Q8N2W9 510 aaPredicted RBP14.58□□□□□ -0.08
LINC02540-201ENST00000455554 ADRA2BP18089 450 aa14.55□□□□□ -0.08
LINC02540-201ENST00000455554 MAPK8IP2Q13387 824 aaPredicted RBP13.46□□□□□ -0.25
LINC02540-201ENST00000455554 DMRT2Q9Y5R5 561 aa13.26□□□□□ -0.29
LINC02540-201ENST00000455554 SCAF1Q9H7N4 1312 aaKnown RBP13.04□□□□□ -0.32
LINC02540-201ENST00000455554 PPP4R3CPQ6ZMV5 832 aa12.85□□□□□ -0.35
LINC02540-201ENST00000455554 DCAF8L1A6NGE4 600 aa12.72□□□□□ -0.37
LINC02540-201ENST00000455554 CACNB1Q02641 598 aaPredicted RBP12.71□□□□□ -0.37
LINC02540-201ENST00000455554 HOXD11P31277 338 aaPredicted RBP12.7□□□□□ -0.38
LINC02540-201ENST00000455554 CNKSR2Q8WXI2 1034 aa12.58□□□□□ -0.4
LINC02540-201ENST00000455554 RNF39Q9H2S5 420 aa12.55□□□□□ -0.4
LINC02540-201ENST00000455554 RNF216Q9NWF9 866 aaPredicted RBP12.51□□□□□ -0.41
LINC02540-201ENST00000455554 C1QBPQ07021 282 aaKnown RBP12.25□□□□□ -0.45
LINC02540-201ENST00000455554 DNAJC5BQ9UF47 199 aa12.16□□□□□ -0.46
LINC02540-201ENST00000455554 NPM3O75607 178 aaKnown RBP12.15□□□□□ -0.46
LINC02540-201ENST00000455554 NCBP3Q53F19 620 aaKnown RBP12.14□□□□□ -0.47
LINC02540-201ENST00000455554 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.06□□□□□ -0.48
LINC02540-201ENST00000455554 U3KPZ7 1027 aaPredicted RBP11.89□□□□□ -0.51
LINC02540-201ENST00000455554 SPINK5Q9NQ38 1064 aaPredicted RBP11.81□□□□□ -0.52
LINC02540-201ENST00000455554 KCNA4P22459 653 aa11.8□□□□□ -0.52
LINC02540-201ENST00000455554 SLC4A2P04920 1241 aa11.71□□□□□ -0.53
LINC02540-201ENST00000455554 DSG3P32926 999 aa11.71□□□□□ -0.53
LINC02540-201ENST00000455554 CAPN15O75808 1086 aa11.69□□□□□ -0.54
LINC02540-201ENST00000455554 ABCB7O75027 752 aa11.49□□□□□ -0.57
LINC02540-201ENST00000455554 TRHP20396 242 aaPredicted RBP11.48□□□□□ -0.57
LINC02540-201ENST00000455554 POTEHQ6S545 545 aa11.46□□□□□ -0.57
LINC02540-201ENST00000455554 ZNF219Q9P2Y4 722 aaPredicted RBP11.33□□□□□ -0.6
LINC02540-201ENST00000455554 APLP2Q06481 763 aa11.32□□□□□ -0.6
LINC02540-201ENST00000455554 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.27□□□□□ -0.61
LINC02540-201ENST00000455554 HNRNPUL2Q1KMD3 747 aaKnown RBP11.27□□□□□ -0.61
LINC02540-201ENST00000455554 SAMD1Q6SPF0 538 aaPredicted RBP11.23□□□□□ -0.61
LINC02540-201ENST00000455554 MYCNP04198 464 aaPredicted RBP11.14□□□□□ -0.63
LINC02540-201ENST00000455554 POLA2Q14181 598 aa11.14□□□□□ -0.63
LINC02540-201ENST00000455554 ATF5Q9Y2D1 282 aaPredicted RBP11.11□□□□□ -0.63
LINC02540-201ENST00000455554 SLC4A1APQ9BWU0 796 aaKnown RBP11.01□□□□□ -0.65
LINC02540-201ENST00000455554 RBM42Q9BTD8 480 aaKnown RBP11□□□□□ -0.65
LINC02540-201ENST00000455554 CHRDL2Q6WN34 429 aa10.96□□□□□ -0.65
LINC02540-201ENST00000455554 FOXD4L1Q9NU39 408 aa10.95□□□□□ -0.66
LINC02540-201ENST00000455554 ZBTB22O15209 634 aa10.92□□□□□ -0.66
LINC02540-201ENST00000455554 OSCARQ8IYS5 282 aa10.82□□□□□ -0.68
LINC02540-201ENST00000455554 AKT1S1Q96B36 256 aa10.78□□□□□ -0.68
LINC02540-201ENST00000455554 REM2Q8IYK8 340 aaPredicted RBP10.76□□□□□ -0.69
LINC02540-201ENST00000455554 ZBTB12Q9Y330 459 aaPredicted RBP10.74□□□□□ -0.69
LINC02540-201ENST00000455554 PIP4P2Q8N4L2 257 aa10.72□□□□□ -0.69
LINC02540-201ENST00000455554 PITPNM1O00562 1244 aa10.68□□□□□ -0.7
LINC02540-201ENST00000455554 SP7Q8TDD2 431 aaPredicted RBP10.64□□□□□ -0.71
LINC02540-201ENST00000455554 FXR2P51116 673 aaKnown RBP eCLIP10.59□□□□□ -0.71
LINC02540-201ENST00000455554 ATXN8OSP0DMR3 200 aa10.56□□□□□ -0.72
LINC02540-201ENST00000455554 EVX2Q03828 476 aa10.55□□□□□ -0.72
LINC02540-201ENST00000455554 MKRN4PQ13434 485 aaPredicted RBP10.55□□□□□ -0.72
LINC02540-201ENST00000455554 HAX1O00165 279 aa10.5□□□□□ -0.73
LINC02540-201ENST00000455554 SPDYE2BA6NHP3 402 aa10.45□□□□□ -0.74
LINC02540-201ENST00000455554 SPDYE6P0CI01 402 aa10.45□□□□□ -0.74
LINC02540-201ENST00000455554 SPDYE2Q495Y8 402 aa10.45□□□□□ -0.74
LINC02540-201ENST00000455554 FBLN2P98095 1184 aa10.42□□□□□ -0.74
LINC02540-201ENST00000455554 CLEC11AQ9Y240 323 aa10.37□□□□□ -0.75
LINC02540-201ENST00000455554 PRKAR2AP13861 404 aaKnown RBP10.36□□□□□ -0.75
LINC02540-201ENST00000455554 SSUH2Q9Y2M2 353 aa10.36□□□□□ -0.75
LINC02540-201ENST00000455554 ZNF692Q9BU19 519 aaPredicted RBP10.34□□□□□ -0.75
LINC02540-201ENST00000455554 CHADLQ6NUI6 762 aa10.3□□□□□ -0.76
LINC02540-201ENST00000455554 SPDYE1Q8NFV5 336 aaPredicted RBP10.3□□□□□ -0.76
LINC02540-201ENST00000455554 C19orf67A6NJJ6 358 aa10.26□□□□□ -0.77
LINC02540-201ENST00000455554 PABPN1Q86U42 306 aaKnown RBP eCLIP10.22□□□□□ -0.77
LINC02540-201ENST00000455554 CSRNP3Q8WYN3 585 aa10.18□□□□□ -0.78
LINC02540-201ENST00000455554 GABBR2O75899 941 aa10.17□□□□□ -0.78
LINC02540-201ENST00000455554 PRR29P0C7W0 189 aa10.13□□□□□ -0.79
LINC02540-201ENST00000455554 POTEIP0CG38 1075 aa10.05□□□□□ -0.8
LINC02540-201ENST00000455554 FARP1Q9Y4F1 1045 aaPredicted RBP10.03□□□□□ -0.8
LINC02540-201ENST00000455554 CD44P16070 742 aaKnown RBP10.01□□□□□ -0.81
LINC02540-201ENST00000455554 LHX8Q68G74 356 aa9.98□□□□□ -0.81
LINC02540-201ENST00000455554 EHMT2Q96KQ7 1210 aa9.94□□□□□ -0.82
LINC02540-201ENST00000455554 CREBZFQ9NS37 354 aa9.94□□□□□ -0.82
LINC02540-201ENST00000455554 ZRANB1Q9UGI0 708 aa9.84□□□□□ -0.83
LINC02540-201ENST00000455554 SPDYE4A6NLX3 237 aa9.83□□□□□ -0.84
LINC02540-201ENST00000455554 ZNF579Q8NAF0 562 aaKnown RBP9.83□□□□□ -0.84
LINC02540-201ENST00000455554 GALR2O43603 387 aaPredicted RBP9.82□□□□□ -0.84
LINC02540-201ENST00000455554 STAG3Q9UJ98 1225 aa9.79□□□□□ -0.84
LINC02540-201ENST00000455554 MNX1P50219 401 aaPredicted RBP9.77□□□□□ -0.85
LINC02540-201ENST00000455554 PHF12Q96QT6 1004 aa9.77□□□□□ -0.85
LINC02540-201ENST00000455554 DCBLD2Q96PD2 775 aa9.76□□□□□ -0.85
LINC02540-201ENST00000455554 CLCN6P51797 869 aa9.75□□□□□ -0.85
LINC02540-201ENST00000455554 POTEB2H3BUK9 544 aa9.73□□□□□ -0.85
LINC02540-201ENST00000455554 PELP1Q8IZL8 1130 aaKnown RBP9.7□□□□□ -0.86
LINC02540-201ENST00000455554 OTUD5Q96G74 571 aa9.66□□□□□ -0.86
LINC02540-201ENST00000455554 MS4A3Q96HJ5 214 aa9.61□□□□□ -0.87
LINC02540-201ENST00000455554 PAK3O75914 559 aaPredicted RBP9.6□□□□□ -0.87
LINC02540-201ENST00000455554 PROM2Q8N271 834 aa9.6□□□□□ -0.87
LINC02540-201ENST00000455554 NPM1P06748 294 aaKnown RBP eCLIP9.58□□□□□ -0.88
LINC02540-201ENST00000455554 POTEJP0CG39 1038 aa9.58□□□□□ -0.88
LINC02540-201ENST00000455554 TSPYL2Q9H2G4 693 aaPredicted RBP9.54□□□□□ -0.88
LINC02540-201ENST00000455554 ATMINO43313 823 aaPredicted RBP9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 8 ms