Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 CDH12P1-201ENST00000518435 295 ntBASIC7.18□□□□□ -1.26
COL9A1P20849 HMGB1P42-201ENST00000532126 553 ntBASIC7.18□□□□□ -1.26
COL9A1P20849 AC026371.1-201ENST00000551867 419 ntBASIC7.18□□□□□ -1.26
COL9A1P20849 AC044860.2-201ENST00000561005 179 ntBASIC7.18□□□□□ -1.26
COL9A1P20849 AC092123.1-202ENST00000565310 405 ntTSL 3 BASIC7.18□□□□□ -1.26
COL9A1P20849 AC026471.4-201ENST00000569291 449 ntTSL 5 BASIC7.18□□□□□ -1.26
COL9A1P20849 AP005230.1-204ENST00000579097 779 ntTSL 2 BASIC7.18□□□□□ -1.26
COL9A1P20849 AC004832.4-201ENST00000608952 331 ntBASIC7.18□□□□□ -1.26
COL9A1P20849 CYP3A51P-201ENST00000633513 256 ntBASIC7.18□□□□□ -1.26
COL9A1P20849 LINC00964-202ENST00000510897 3534 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
COL9A1P20849 PSMD5-AS1-213ENST00000640327 3531 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
COL9A1P20849 CYP4Z1-201ENST00000334194 1906 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
COL9A1P20849 NUP98-202ENST00000355260 5628 ntTSL 5 BASIC7.18□□□□□ -1.26
COL9A1P20849 AL122126.1-201ENST00000546905 1318 ntBASIC7.18□□□□□ -1.26
COL9A1P20849 SLCO1A2-212ENST00000458504 2008 ntTSL 2 BASIC7.18□□□□□ -1.26
COL9A1P20849 SLFN13-209ENST00000533791 4121 ntAPPRIS P1 TSL 2 BASIC7.18□□□□□ -1.26
COL9A1P20849 CAPRIN1-209ENST00000530820 3454 ntAPPRIS ALT2 TSL 5 BASIC7.18□□□□□ -1.26
COL9A1P20849 KLHL2-202ENST00000421009 2452 ntTSL 5 BASIC7.18□□□□□ -1.26
COL9A1P20849 LINC01697-202ENST00000426534 1764 ntTSL 2 BASIC7.18□□□□□ -1.26
COL9A1P20849 PRLR-219ENST00000619676 1402 ntTSL 5 BASIC7.18□□□□□ -1.26
COL9A1P20849 BICC1-202ENST00000373886 5475 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
COL9A1P20849 MCM8-205ENST00000610722 7486 ntAPPRIS P4 TSL 1 (best) BASIC7.17□□□□□ -1.26
COL9A1P20849 DLG2-209ENST00000418306 3027 ntTSL 2 BASIC7.17□□□□□ -1.26
COL9A1P20849 CFAP65-201ENST00000295729 2259 ntAPPRIS ALT2 TSL 1 (best) BASIC7.17□□□□□ -1.26
COL9A1P20849 TMX2-202ENST00000378312 1521 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
COL9A1P20849 IQCA1-206ENST00000431676 3069 ntAPPRIS ALT2 TSL 2 BASIC7.17□□□□□ -1.26
COL9A1P20849 GM2A-201ENST00000357164 3896 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
COL9A1P20849 NELL2-217ENST00000551601 3148 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
COL9A1P20849 SRGAP3-213ENST00000618999 3929 ntTSL 5 BASIC7.17□□□□□ -1.26
COL9A1P20849 MR1-208ENST00000614012 7860 ntAPPRIS P1 TSL 5 BASIC7.17□□□□□ -1.26
COL9A1P20849 LRRC7-202ENST00000310961 6507 ntAPPRIS ALT2 TSL 5 BASIC7.17□□□□□ -1.26
COL9A1P20849 RTL9-201ENST00000465301 5426 ntAPPRIS P2 TSL 1 (best) BASIC7.17□□□□□ -1.26
COL9A1P20849 DEFB1-201ENST00000297439 478 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
COL9A1P20849 Y_RNA.200-201ENST00000364018 102 ntBASIC7.17□□□□□ -1.26
COL9A1P20849 RN7SKP107-201ENST00000364157 290 ntBASIC7.17□□□□□ -1.26
COL9A1P20849 RNU4-42P-201ENST00000364738 142 ntBASIC7.17□□□□□ -1.26
COL9A1P20849 RNU6-306P-201ENST00000384617 107 ntBASIC7.17□□□□□ -1.26
COL9A1P20849 RN7SKP254-201ENST00000410685 310 ntBASIC7.17□□□□□ -1.26
COL9A1P20849 LINC01501-201ENST00000427523 409 ntTSL 3 BASIC7.17□□□□□ -1.26
COL9A1P20849 AC016912.1-201ENST00000432241 545 ntTSL 3 BASIC7.17□□□□□ -1.26
COL9A1P20849 UBBP5-201ENST00000446970 266 ntBASIC7.17□□□□□ -1.26
COL9A1P20849 AC093627.1-201ENST00000465755 877 ntTSL 3 BASIC7.17□□□□□ -1.26
COL9A1P20849 FAM107B-217ENST00000478076 790 ntAPPRIS P1 TSL 4 BASIC7.17□□□□□ -1.26
COL9A1P20849 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC7.17□□□□□ -1.26
COL9A1P20849 GYPB-202ENST00000502664 521 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
COL9A1P20849 LINC02432-203ENST00000511213 719 ntTSL 2 BASIC7.17□□□□□ -1.26
COL9A1P20849 AC067942.3-201ENST00000512025 362 ntBASIC7.17□□□□□ -1.26
COL9A1P20849 SNORA31.6-201ENST00000516241 130 ntBASIC7.17□□□□□ -1.26
COL9A1P20849 RNU6-897P-201ENST00000517135 105 ntBASIC7.17□□□□□ -1.26
COL9A1P20849 CYCSP22-201ENST00000517555 339 ntBASIC7.17□□□□□ -1.26
COL9A1P20849 AC110011.1-201ENST00000518260 582 ntTSL 3 BASIC7.17□□□□□ -1.26
COL9A1P20849 CARD16-203ENST00000525374 503 ntTSL 3 BASIC7.17□□□□□ -1.26
COL9A1P20849 DYNLL1P4-201ENST00000549314 266 ntBASIC7.17□□□□□ -1.26
COL9A1P20849 AC090517.1-201ENST00000569307 266 ntBASIC7.17□□□□□ -1.26
COL9A1P20849 LINC00511-212ENST00000581183 657 ntTSL 3 BASIC7.17□□□□□ -1.26
COL9A1P20849 MZT1P2-201ENST00000604387 248 ntBASIC7.17□□□□□ -1.26
COL9A1P20849 AL596245.1-201ENST00000618994 362 ntBASIC7.17□□□□□ -1.26
COL9A1P20849 MIR6810-201ENST00000622701 70 ntBASIC7.17□□□□□ -1.26
COL9A1P20849 PAPOLG-201ENST00000238714 4263 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
COL9A1P20849 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC7.17□□□□□ -1.26
COL9A1P20849 LINC00506-203ENST00000629295 4300 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
COL9A1P20849 ZFP90-201ENST00000398253 4384 ntAPPRIS P1 TSL 4 BASIC7.17□□□□□ -1.26
COL9A1P20849 CHURC1-208ENST00000607599 3615 ntTSL 2 BASIC7.17□□□□□ -1.26
COL9A1P20849 CLCN5-201ENST00000307367 3177 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
COL9A1P20849 C11orf63-203ENST00000531316 2782 ntAPPRIS P1 TSL 2 BASIC7.17□□□□□ -1.26
COL9A1P20849 SP110-203ENST00000358662 2337 ntAPPRIS ALT2 TSL 1 (best) BASIC7.17□□□□□ -1.26
COL9A1P20849 ZFP42-203ENST00000618147 2338 ntAPPRIS P1 BASIC7.17□□□□□ -1.26
COL9A1P20849 LINC02203-204ENST00000628444 2323 ntTSL 2 BASIC7.17□□□□□ -1.26
COL9A1P20849 BCL2L14-203ENST00000308721 1897 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
COL9A1P20849 URB1-201ENST00000382751 10832 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
COL9A1P20849 AL354696.2-201ENST00000619407 1910 ntTSL 2 BASIC7.17□□□□□ -1.26
COL9A1P20849 AC244502.1-201ENST00000514473 1951 ntTSL 2 BASIC7.17□□□□□ -1.26
COL9A1P20849 ADH4-212ENST00000629236 1974 ntTSL 5 BASIC7.17□□□□□ -1.26
COL9A1P20849 TRIM42-201ENST00000286349 2539 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
COL9A1P20849 AC025263.1-201ENST00000501387 2538 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
COL9A1P20849 SLFN12L-201ENST00000260908 3119 ntAPPRIS P2 TSL 5 BASIC7.16□□□□□ -1.26
COL9A1P20849 RNF24-203ENST00000432261 3149 ntTSL 5 BASIC7.16□□□□□ -1.26
COL9A1P20849 TRPS1-212ENST00000640765 9514 ntTSL 2 BASIC7.16□□□□□ -1.26
COL9A1P20849 OR7D2-203ENST00000642043 3157 ntAPPRIS P1 BASIC7.16□□□□□ -1.26
COL9A1P20849 NRP1-205ENST00000374823 3737 ntTSL 1 (best) BASIC7.16□□□□□ -1.26
COL9A1P20849 CLCN5-204ENST00000376108 2660 ntAPPRIS P1 TSL 1 (best) BASIC7.16□□□□□ -1.26
COL9A1P20849 GCNT1-202ENST00000442371 5972 ntAPPRIS P1 TSL 1 (best) BASIC7.16□□□□□ -1.26
COL9A1P20849 PLAGL1-202ENST00000360537 4430 ntAPPRIS P1 TSL 5 BASIC7.16□□□□□ -1.26
COL9A1P20849 SHC4-202ENST00000396535 2799 ntTSL 1 (best) BASIC7.16□□□□□ -1.26
COL9A1P20849 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC7.16□□□□□ -1.26
COL9A1P20849 CABYR-202ENST00000399481 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC7.16□□□□□ -1.26
COL9A1P20849 TEX9-209ENST00000561221 2297 ntTSL 5 BASIC7.16□□□□□ -1.26
COL9A1P20849 SLC26A9-202ENST00000367134 4616 ntTSL 5 BASIC7.16□□□□□ -1.26
COL9A1P20849 PKP4-AS1-201ENST00000342892 4067 ntTSL 2 BASIC7.16□□□□□ -1.26
COL9A1P20849 USP1-202ENST00000371146 3507 ntAPPRIS P1 TSL 5 BASIC7.16□□□□□ -1.26
COL9A1P20849 GRIN2A-205ENST00000535259 4118 ntTSL 5 BASIC7.16□□□□□ -1.26
COL9A1P20849 LINC01847-202ENST00000523311 1762 ntTSL 5 BASIC7.16□□□□□ -1.26
COL9A1P20849 TP53BP1-202ENST00000382039 6015 ntTSL 5 BASIC7.16□□□□□ -1.26
COL9A1P20849 HIVEP2-202ENST00000367603 9724 ntAPPRIS P1 TSL 1 (best) BASIC7.16□□□□□ -1.26
COL9A1P20849 BMPR1B-201ENST00000264568 1807 ntAPPRIS P1 TSL 2 BASIC7.16□□□□□ -1.26
COL9A1P20849 OR2L13-203ENST00000641893 1817 ntAPPRIS P1 BASIC7.16□□□□□ -1.26
COL9A1P20849 OSGEPL1-201ENST00000264151 1885 ntAPPRIS P1 TSL 1 (best) BASIC7.16□□□□□ -1.26
COL9A1P20849 FUT10-206ENST00000518672 3115 ntTSL 1 (best) BASIC7.16□□□□□ -1.26
COL9A1P20849 NRXN1-206ENST00000402717 2508 ntTSL 5 BASIC7.16□□□□□ -1.26
COL9A1P20849 Y_RNA.122-201ENST00000363331 96 ntBASIC7.16□□□□□ -1.26
Retrieved 100 of 98,524 protein–RNA pairs in 114.1 ms