Protein–RNA interactions for Protein: Q9NP79

VTA1, Vacuolar protein sorting-associated protein VTA1 homolog, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1Q9NP79 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
VTA1Q9NP79 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
VTA1Q9NP79 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
VTA1Q9NP79 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC21.66■■□□□ 1.06
VTA1Q9NP79 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
VTA1Q9NP79 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
VTA1Q9NP79 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
VTA1Q9NP79 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
VTA1Q9NP79 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
VTA1Q9NP79 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
VTA1Q9NP79 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
VTA1Q9NP79 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC21.66■■□□□ 1.06
VTA1Q9NP79 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC21.66■■□□□ 1.06
VTA1Q9NP79 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
VTA1Q9NP79 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC21.66■■□□□ 1.06
VTA1Q9NP79 AC008622.2-201ENST00000617006 1229 ntBASIC21.66■■□□□ 1.06
VTA1Q9NP79 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
VTA1Q9NP79 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
VTA1Q9NP79 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
VTA1Q9NP79 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
VTA1Q9NP79 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
VTA1Q9NP79 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC21.65■■□□□ 1.06
VTA1Q9NP79 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
VTA1Q9NP79 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
VTA1Q9NP79 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
VTA1Q9NP79 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC21.65■■□□□ 1.06
VTA1Q9NP79 AP000523.1-201ENST00000398242 1049 ntBASIC21.65■■□□□ 1.06
VTA1Q9NP79 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
VTA1Q9NP79 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
VTA1Q9NP79 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
VTA1Q9NP79 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC21.65■■□□□ 1.06
VTA1Q9NP79 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC21.65■■□□□ 1.06
VTA1Q9NP79 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC21.65■■□□□ 1.06
VTA1Q9NP79 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC21.65■■□□□ 1.06
VTA1Q9NP79 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
VTA1Q9NP79 AP000550.4-202ENST00000639755 178 ntBASIC21.65■■□□□ 1.06
VTA1Q9NP79 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
VTA1Q9NP79 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
VTA1Q9NP79 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
VTA1Q9NP79 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC21.65■■□□□ 1.06
VTA1Q9NP79 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC21.65■■□□□ 1.06
VTA1Q9NP79 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
VTA1Q9NP79 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC21.65■■□□□ 1.06
VTA1Q9NP79 AL391422.3-201ENST00000603791 2761 ntBASIC21.65■■□□□ 1.06
VTA1Q9NP79 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
VTA1Q9NP79 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
VTA1Q9NP79 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
VTA1Q9NP79 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC21.64■■□□□ 1.05
VTA1Q9NP79 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
VTA1Q9NP79 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
VTA1Q9NP79 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
VTA1Q9NP79 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC21.64■■□□□ 1.05
VTA1Q9NP79 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
VTA1Q9NP79 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.05
VTA1Q9NP79 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC21.64■■□□□ 1.05
VTA1Q9NP79 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC21.64■■□□□ 1.05
VTA1Q9NP79 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC21.64■■□□□ 1.05
VTA1Q9NP79 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC21.64■■□□□ 1.05
VTA1Q9NP79 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC21.64■■□□□ 1.05
VTA1Q9NP79 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC21.64■■□□□ 1.05
VTA1Q9NP79 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC21.64■■□□□ 1.05
VTA1Q9NP79 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC21.64■■□□□ 1.05
VTA1Q9NP79 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC21.63■■□□□ 1.05
VTA1Q9NP79 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
VTA1Q9NP79 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC21.63■■□□□ 1.05
VTA1Q9NP79 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
VTA1Q9NP79 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC21.63■■□□□ 1.05
VTA1Q9NP79 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
VTA1Q9NP79 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC21.63■■□□□ 1.05
VTA1Q9NP79 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC21.63■■□□□ 1.05
VTA1Q9NP79 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC21.63■■□□□ 1.05
VTA1Q9NP79 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
VTA1Q9NP79 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
VTA1Q9NP79 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
VTA1Q9NP79 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
VTA1Q9NP79 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
VTA1Q9NP79 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC21.63■■□□□ 1.05
VTA1Q9NP79 AL359075.1-203ENST00000462729 1002 ntBASIC21.63■■□□□ 1.05
VTA1Q9NP79 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC21.63■■□□□ 1.05
VTA1Q9NP79 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC21.63■■□□□ 1.05
VTA1Q9NP79 ETFA-216ENST00000560726 942 ntTSL 3 BASIC21.63■■□□□ 1.05
VTA1Q9NP79 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC21.63■■□□□ 1.05
VTA1Q9NP79 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
VTA1Q9NP79 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
VTA1Q9NP79 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
VTA1Q9NP79 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
VTA1Q9NP79 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC21.63■■□□□ 1.05
VTA1Q9NP79 AL137060.1-201ENST00000618151 2648 ntBASIC21.63■■□□□ 1.05
VTA1Q9NP79 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
VTA1Q9NP79 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC21.63■■□□□ 1.05
VTA1Q9NP79 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
VTA1Q9NP79 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
VTA1Q9NP79 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
VTA1Q9NP79 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC21.62■■□□□ 1.05
VTA1Q9NP79 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC21.62■■□□□ 1.05
VTA1Q9NP79 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC21.62■■□□□ 1.05
VTA1Q9NP79 AC104417.2-201ENST00000562989 1793 ntBASIC21.62■■□□□ 1.05
VTA1Q9NP79 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC21.62■■□□□ 1.05
VTA1Q9NP79 AL671277.2-201ENST00000458060 996 ntBASIC21.62■■□□□ 1.05
VTA1Q9NP79 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC21.62■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms