Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
TRIM39Q9HCM9 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRIM39Q9HCM9 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC19.19■□□□□ 0.66
TRIM39Q9HCM9 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC19.19■□□□□ 0.66
TRIM39Q9HCM9 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM39Q9HCM9 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM39Q9HCM9 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM39Q9HCM9 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM39Q9HCM9 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC19.18■□□□□ 0.66
TRIM39Q9HCM9 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
TRIM39Q9HCM9 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM39Q9HCM9 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC19.18■□□□□ 0.66
TRIM39Q9HCM9 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM39Q9HCM9 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM39Q9HCM9 NUDT16P1-203ENST00000513809 620 ntBASIC19.18■□□□□ 0.66
TRIM39Q9HCM9 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC19.18■□□□□ 0.66
TRIM39Q9HCM9 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM39Q9HCM9 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC19.18■□□□□ 0.66
TRIM39Q9HCM9 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC19.18■□□□□ 0.66
TRIM39Q9HCM9 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM39Q9HCM9 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM39Q9HCM9 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC19.18■□□□□ 0.66
TRIM39Q9HCM9 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM39Q9HCM9 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
TRIM39Q9HCM9 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC19.18■□□□□ 0.66
TRIM39Q9HCM9 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRIM39Q9HCM9 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRIM39Q9HCM9 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC19.17■□□□□ 0.66
TRIM39Q9HCM9 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
TRIM39Q9HCM9 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC19.17■□□□□ 0.66
TRIM39Q9HCM9 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
TRIM39Q9HCM9 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC19.17■□□□□ 0.66
TRIM39Q9HCM9 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC19.17■□□□□ 0.66
TRIM39Q9HCM9 AC004980.1-204ENST00000429707 299 ntBASIC19.17■□□□□ 0.66
TRIM39Q9HCM9 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC19.17■□□□□ 0.66
TRIM39Q9HCM9 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC19.17■□□□□ 0.66
TRIM39Q9HCM9 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
TRIM39Q9HCM9 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC19.17■□□□□ 0.66
TRIM39Q9HCM9 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRIM39Q9HCM9 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
TRIM39Q9HCM9 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRIM39Q9HCM9 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRIM39Q9HCM9 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRIM39Q9HCM9 ANKRD18DP-204ENST00000455355 1975 ntBASIC19.17■□□□□ 0.66
TRIM39Q9HCM9 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC19.17■□□□□ 0.66
TRIM39Q9HCM9 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC19.17■□□□□ 0.66
TRIM39Q9HCM9 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRIM39Q9HCM9 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRIM39Q9HCM9 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRIM39Q9HCM9 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
TRIM39Q9HCM9 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM39Q9HCM9 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM39Q9HCM9 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM39Q9HCM9 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC19.16■□□□□ 0.66
TRIM39Q9HCM9 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM39Q9HCM9 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC19.16■□□□□ 0.66
TRIM39Q9HCM9 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
TRIM39Q9HCM9 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM39Q9HCM9 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC19.16■□□□□ 0.66
TRIM39Q9HCM9 AP003071.4-201ENST00000562276 1284 ntBASIC19.16■□□□□ 0.66
TRIM39Q9HCM9 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM39Q9HCM9 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM39Q9HCM9 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC19.16■□□□□ 0.66
TRIM39Q9HCM9 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
TRIM39Q9HCM9 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM39Q9HCM9 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC19.16■□□□□ 0.66
TRIM39Q9HCM9 AC125437.2-201ENST00000625180 2167 ntBASIC19.16■□□□□ 0.66
TRIM39Q9HCM9 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM39Q9HCM9 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM39Q9HCM9 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM39Q9HCM9 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC19.16■□□□□ 0.66
TRIM39Q9HCM9 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
TRIM39Q9HCM9 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
TRIM39Q9HCM9 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC19.15■□□□□ 0.66
TRIM39Q9HCM9 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
TRIM39Q9HCM9 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC19.15■□□□□ 0.66
TRIM39Q9HCM9 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC19.15■□□□□ 0.66
TRIM39Q9HCM9 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC19.15■□□□□ 0.66
TRIM39Q9HCM9 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
TRIM39Q9HCM9 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC19.15■□□□□ 0.66
TRIM39Q9HCM9 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
TRIM39Q9HCM9 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
TRIM39Q9HCM9 AL160286.2-201ENST00000567150 934 ntBASIC19.15■□□□□ 0.66
TRIM39Q9HCM9 AC026271.3-201ENST00000571884 352 ntBASIC19.15■□□□□ 0.66
TRIM39Q9HCM9 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC19.15■□□□□ 0.66
TRIM39Q9HCM9 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
TRIM39Q9HCM9 ABBA01031674.1-201ENST00000635145 728 ntBASIC19.15■□□□□ 0.66
TRIM39Q9HCM9 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
TRIM39Q9HCM9 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
TRIM39Q9HCM9 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
TRIM39Q9HCM9 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
TRIM39Q9HCM9 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC19.15■□□□□ 0.66
TRIM39Q9HCM9 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
TRIM39Q9HCM9 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC19.15■□□□□ 0.66
TRIM39Q9HCM9 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
TRIM39Q9HCM9 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
TRIM39Q9HCM9 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
TRIM39Q9HCM9 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
TRIM39Q9HCM9 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.66
TRIM39Q9HCM9 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms