Protein–RNA interactions for Protein: Q9C0C7

AMBRA1, Activating molecule in BECN1-regulated autophagy protein 1, humanhuman

Predictions only

Length 1,298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AMBRA1Q9C0C7 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
AMBRA1Q9C0C7 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC18.08■□□□□ 0.48
AMBRA1Q9C0C7 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC18.08■□□□□ 0.48
AMBRA1Q9C0C7 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC18.08■□□□□ 0.48
AMBRA1Q9C0C7 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
AMBRA1Q9C0C7 COMP-202ENST00000425807 2292 ntTSL 2 BASIC18.08■□□□□ 0.48
AMBRA1Q9C0C7 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
AMBRA1Q9C0C7 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
AMBRA1Q9C0C7 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC18.08■□□□□ 0.48
AMBRA1Q9C0C7 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC18.08■□□□□ 0.48
AMBRA1Q9C0C7 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC18.08■□□□□ 0.48
AMBRA1Q9C0C7 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
AMBRA1Q9C0C7 MKRN4P-201ENST00000444706 1521 ntBASIC18.08■□□□□ 0.48
AMBRA1Q9C0C7 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC18.08■□□□□ 0.48
AMBRA1Q9C0C7 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC18.08■□□□□ 0.48
AMBRA1Q9C0C7 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
AMBRA1Q9C0C7 AC079598.2-202ENST00000546624 1451 ntBASIC18.07■□□□□ 0.48
AMBRA1Q9C0C7 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
AMBRA1Q9C0C7 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
AMBRA1Q9C0C7 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
AMBRA1Q9C0C7 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
AMBRA1Q9C0C7 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
AMBRA1Q9C0C7 AL355802.2-201ENST00000402069 882 ntBASIC18.07■□□□□ 0.48
AMBRA1Q9C0C7 AC073210.2-201ENST00000430369 194 ntBASIC18.07■□□□□ 0.48
AMBRA1Q9C0C7 HES2-205ENST00000487437 968 ntTSL 3 BASIC18.07■□□□□ 0.48
AMBRA1Q9C0C7 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC18.07■□□□□ 0.48
AMBRA1Q9C0C7 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC18.07■□□□□ 0.48
AMBRA1Q9C0C7 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC18.07■□□□□ 0.48
AMBRA1Q9C0C7 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC18.07■□□□□ 0.48
AMBRA1Q9C0C7 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC18.07■□□□□ 0.48
AMBRA1Q9C0C7 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC18.07■□□□□ 0.48
AMBRA1Q9C0C7 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
AMBRA1Q9C0C7 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
AMBRA1Q9C0C7 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
AMBRA1Q9C0C7 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC18.07■□□□□ 0.48
AMBRA1Q9C0C7 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
AMBRA1Q9C0C7 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC18.07■□□□□ 0.48
AMBRA1Q9C0C7 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
AMBRA1Q9C0C7 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
AMBRA1Q9C0C7 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC18.07■□□□□ 0.48
AMBRA1Q9C0C7 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
AMBRA1Q9C0C7 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC18.06■□□□□ 0.48
AMBRA1Q9C0C7 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC18.06■□□□□ 0.48
AMBRA1Q9C0C7 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
AMBRA1Q9C0C7 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
AMBRA1Q9C0C7 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
AMBRA1Q9C0C7 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
AMBRA1Q9C0C7 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC18.06■□□□□ 0.48
AMBRA1Q9C0C7 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
AMBRA1Q9C0C7 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
AMBRA1Q9C0C7 AL133373.2-201ENST00000623187 2828 ntBASIC18.06■□□□□ 0.48
AMBRA1Q9C0C7 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
AMBRA1Q9C0C7 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
AMBRA1Q9C0C7 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC18.06■□□□□ 0.48
AMBRA1Q9C0C7 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
AMBRA1Q9C0C7 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
AMBRA1Q9C0C7 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
AMBRA1Q9C0C7 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC18.06■□□□□ 0.48
AMBRA1Q9C0C7 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
AMBRA1Q9C0C7 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC18.06■□□□□ 0.48
AMBRA1Q9C0C7 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC18.06■□□□□ 0.48
AMBRA1Q9C0C7 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
AMBRA1Q9C0C7 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
AMBRA1Q9C0C7 MOK-233ENST00000524214 1539 ntTSL 2 BASIC18.06■□□□□ 0.48
AMBRA1Q9C0C7 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC18.06■□□□□ 0.48
AMBRA1Q9C0C7 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC18.06■□□□□ 0.48
AMBRA1Q9C0C7 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
AMBRA1Q9C0C7 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
AMBRA1Q9C0C7 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC18.06■□□□□ 0.48
AMBRA1Q9C0C7 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC18.06■□□□□ 0.48
AMBRA1Q9C0C7 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC18.06■□□□□ 0.48
AMBRA1Q9C0C7 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC18.06■□□□□ 0.48
AMBRA1Q9C0C7 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC18.06■□□□□ 0.48
AMBRA1Q9C0C7 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
AMBRA1Q9C0C7 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
AMBRA1Q9C0C7 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
AMBRA1Q9C0C7 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
AMBRA1Q9C0C7 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC18.05■□□□□ 0.48
AMBRA1Q9C0C7 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC18.05■□□□□ 0.48
AMBRA1Q9C0C7 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
AMBRA1Q9C0C7 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC18.05■□□□□ 0.48
AMBRA1Q9C0C7 AC116351.2-201ENST00000606540 1585 ntBASIC18.05■□□□□ 0.48
AMBRA1Q9C0C7 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC18.05■□□□□ 0.48
AMBRA1Q9C0C7 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC18.05■□□□□ 0.48
AMBRA1Q9C0C7 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
AMBRA1Q9C0C7 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
AMBRA1Q9C0C7 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC18.05■□□□□ 0.48
AMBRA1Q9C0C7 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC18.05■□□□□ 0.48
AMBRA1Q9C0C7 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC18.05■□□□□ 0.48
AMBRA1Q9C0C7 PFKL-212ENST00000628044 129 ntTSL 3 BASIC18.05■□□□□ 0.48
AMBRA1Q9C0C7 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC18.05■□□□□ 0.48
AMBRA1Q9C0C7 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC18.05■□□□□ 0.48
AMBRA1Q9C0C7 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
AMBRA1Q9C0C7 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
AMBRA1Q9C0C7 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC18.05■□□□□ 0.48
AMBRA1Q9C0C7 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
AMBRA1Q9C0C7 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC18.05■□□□□ 0.48
AMBRA1Q9C0C7 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
AMBRA1Q9C0C7 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC18.05■□□□□ 0.48
AMBRA1Q9C0C7 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 44.7 ms