Protein–RNA interactions for Protein: Q99958

FOXC2, Forkhead box protein C2, humanhuman

Predictions only

Length 501 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXC2Q99958 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC16.31■□□□□ 0.2
FOXC2Q99958 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC16.31■□□□□ 0.2
FOXC2Q99958 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
FOXC2Q99958 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC16.31■□□□□ 0.2
FOXC2Q99958 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
FOXC2Q99958 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC16.31■□□□□ 0.2
FOXC2Q99958 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC16.31■□□□□ 0.2
FOXC2Q99958 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
FOXC2Q99958 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
FOXC2Q99958 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
FOXC2Q99958 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
FOXC2Q99958 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
FOXC2Q99958 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
FOXC2Q99958 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC16.3■□□□□ 0.2
FOXC2Q99958 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
FOXC2Q99958 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
FOXC2Q99958 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
FOXC2Q99958 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC16.3■□□□□ 0.2
FOXC2Q99958 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC16.3■□□□□ 0.2
FOXC2Q99958 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC16.3■□□□□ 0.2
FOXC2Q99958 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
FOXC2Q99958 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
FOXC2Q99958 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
FOXC2Q99958 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC16.3■□□□□ 0.2
FOXC2Q99958 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC16.3■□□□□ 0.2
FOXC2Q99958 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC16.3■□□□□ 0.2
FOXC2Q99958 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC16.3■□□□□ 0.2
FOXC2Q99958 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
FOXC2Q99958 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC16.3■□□□□ 0.2
FOXC2Q99958 AC242852.2-201ENST00000615738 1807 ntBASIC16.3■□□□□ 0.2
FOXC2Q99958 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
FOXC2Q99958 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
FOXC2Q99958 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
FOXC2Q99958 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
FOXC2Q99958 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
FOXC2Q99958 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC16.29■□□□□ 0.2
FOXC2Q99958 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
FOXC2Q99958 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
FOXC2Q99958 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
FOXC2Q99958 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
FOXC2Q99958 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
FOXC2Q99958 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC16.29■□□□□ 0.2
FOXC2Q99958 AL137060.1-201ENST00000618151 2648 ntBASIC16.29■□□□□ 0.2
FOXC2Q99958 AC121338.2-201ENST00000622535 1744 ntBASIC16.29■□□□□ 0.2
FOXC2Q99958 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
FOXC2Q99958 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
FOXC2Q99958 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC16.29■□□□□ 0.2
FOXC2Q99958 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
FOXC2Q99958 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC16.29■□□□□ 0.2
FOXC2Q99958 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC16.29■□□□□ 0.2
FOXC2Q99958 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC16.29■□□□□ 0.2
FOXC2Q99958 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
FOXC2Q99958 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC16.29■□□□□ 0.2
FOXC2Q99958 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
FOXC2Q99958 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
FOXC2Q99958 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
FOXC2Q99958 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC16.29■□□□□ 0.2
FOXC2Q99958 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
FOXC2Q99958 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
FOXC2Q99958 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
FOXC2Q99958 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
FOXC2Q99958 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC16.28■□□□□ 0.2
FOXC2Q99958 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
FOXC2Q99958 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC16.28■□□□□ 0.2
FOXC2Q99958 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
FOXC2Q99958 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
FOXC2Q99958 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
FOXC2Q99958 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC16.28■□□□□ 0.2
FOXC2Q99958 GCSHP2-201ENST00000560971 527 ntBASIC16.28■□□□□ 0.2
FOXC2Q99958 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
FOXC2Q99958 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
FOXC2Q99958 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
FOXC2Q99958 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
FOXC2Q99958 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC16.27■□□□□ 0.2
FOXC2Q99958 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
FOXC2Q99958 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
FOXC2Q99958 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC16.27■□□□□ 0.2
FOXC2Q99958 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
FOXC2Q99958 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC16.27■□□□□ 0.2
FOXC2Q99958 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
FOXC2Q99958 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC16.27■□□□□ 0.2
FOXC2Q99958 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC16.27■□□□□ 0.2
FOXC2Q99958 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
FOXC2Q99958 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
FOXC2Q99958 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
FOXC2Q99958 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
FOXC2Q99958 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
FOXC2Q99958 AL022342.1-201ENST00000400363 863 ntBASIC16.27■□□□□ 0.2
FOXC2Q99958 AL645929.1-201ENST00000420084 975 ntBASIC16.27■□□□□ 0.2
FOXC2Q99958 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC16.27■□□□□ 0.2
FOXC2Q99958 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC16.27■□□□□ 0.2
FOXC2Q99958 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC16.27■□□□□ 0.2
FOXC2Q99958 NT5C-210ENST00000582160 860 ntTSL 2 BASIC16.27■□□□□ 0.2
FOXC2Q99958 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
FOXC2Q99958 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
FOXC2Q99958 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC16.27■□□□□ 0.19
FOXC2Q99958 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
FOXC2Q99958 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
FOXC2Q99958 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
FOXC2Q99958 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms