Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
VPS35Q96QK1 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
VPS35Q96QK1 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC19.22■□□□□ 0.67
VPS35Q96QK1 GRAP-204ENST00000573099 846 ntTSL 3 BASIC19.22■□□□□ 0.67
VPS35Q96QK1 CD177P1-201ENST00000606252 935 ntBASIC19.22■□□□□ 0.67
VPS35Q96QK1 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VPS35Q96QK1 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VPS35Q96QK1 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
VPS35Q96QK1 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VPS35Q96QK1 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC19.22■□□□□ 0.67
VPS35Q96QK1 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VPS35Q96QK1 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC19.22■□□□□ 0.67
VPS35Q96QK1 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC19.21■□□□□ 0.67
VPS35Q96QK1 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
VPS35Q96QK1 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
VPS35Q96QK1 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
VPS35Q96QK1 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
VPS35Q96QK1 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC19.21■□□□□ 0.67
VPS35Q96QK1 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC19.21■□□□□ 0.67
VPS35Q96QK1 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC19.21■□□□□ 0.67
VPS35Q96QK1 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC19.21■□□□□ 0.67
VPS35Q96QK1 AC026271.3-201ENST00000571884 352 ntBASIC19.21■□□□□ 0.67
VPS35Q96QK1 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
VPS35Q96QK1 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC19.21■□□□□ 0.67
VPS35Q96QK1 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC19.21■□□□□ 0.67
VPS35Q96QK1 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC19.21■□□□□ 0.67
VPS35Q96QK1 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC19.21■□□□□ 0.67
VPS35Q96QK1 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
VPS35Q96QK1 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VPS35Q96QK1 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VPS35Q96QK1 PWWP2AP1-201ENST00000429776 2273 ntBASIC19.21■□□□□ 0.67
VPS35Q96QK1 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VPS35Q96QK1 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
VPS35Q96QK1 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC19.21■□□□□ 0.67
VPS35Q96QK1 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC19.2■□□□□ 0.66
VPS35Q96QK1 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC19.2■□□□□ 0.66
VPS35Q96QK1 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
VPS35Q96QK1 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
VPS35Q96QK1 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
VPS35Q96QK1 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
VPS35Q96QK1 FAM197Y1-201ENST00000421178 764 ntBASIC19.2■□□□□ 0.66
VPS35Q96QK1 AC004980.1-204ENST00000429707 299 ntBASIC19.2■□□□□ 0.66
VPS35Q96QK1 PENK-204ENST00000518770 863 ntTSL 2 BASIC19.2■□□□□ 0.66
VPS35Q96QK1 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
VPS35Q96QK1 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC19.2■□□□□ 0.66
VPS35Q96QK1 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC19.2■□□□□ 0.66
VPS35Q96QK1 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC19.2■□□□□ 0.66
VPS35Q96QK1 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
VPS35Q96QK1 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC19.2■□□□□ 0.66
VPS35Q96QK1 AC131212.4-201ENST00000623606 975 ntBASIC19.2■□□□□ 0.66
VPS35Q96QK1 CR392000.1-201ENST00000624770 1228 ntBASIC19.2■□□□□ 0.66
VPS35Q96QK1 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC19.2■□□□□ 0.66
VPS35Q96QK1 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
VPS35Q96QK1 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
VPS35Q96QK1 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VPS35Q96QK1 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VPS35Q96QK1 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VPS35Q96QK1 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC19.2■□□□□ 0.66
VPS35Q96QK1 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC19.2■□□□□ 0.66
VPS35Q96QK1 ZNF815P-204ENST00000434898 1737 ntBASIC19.2■□□□□ 0.66
VPS35Q96QK1 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
VPS35Q96QK1 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC19.19■□□□□ 0.66
VPS35Q96QK1 AFG3L1P-217ENST00000557444 2447 ntBASIC19.19■□□□□ 0.66
VPS35Q96QK1 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
VPS35Q96QK1 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
VPS35Q96QK1 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC19.19■□□□□ 0.66
VPS35Q96QK1 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC19.19■□□□□ 0.66
VPS35Q96QK1 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
VPS35Q96QK1 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC19.19■□□□□ 0.66
VPS35Q96QK1 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
VPS35Q96QK1 AL160286.2-201ENST00000567150 934 ntBASIC19.19■□□□□ 0.66
VPS35Q96QK1 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC19.19■□□□□ 0.66
VPS35Q96QK1 MIR4497-201ENST00000583208 89 ntBASIC19.19■□□□□ 0.66
VPS35Q96QK1 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC19.19■□□□□ 0.66
VPS35Q96QK1 AL031985.4-201ENST00000642138 673 ntBASIC19.19■□□□□ 0.66
VPS35Q96QK1 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC19.19■□□□□ 0.66
VPS35Q96QK1 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
VPS35Q96QK1 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
VPS35Q96QK1 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
VPS35Q96QK1 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
VPS35Q96QK1 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
VPS35Q96QK1 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
VPS35Q96QK1 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC19.19■□□□□ 0.66
VPS35Q96QK1 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
VPS35Q96QK1 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
VPS35Q96QK1 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
VPS35Q96QK1 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
VPS35Q96QK1 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
VPS35Q96QK1 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
VPS35Q96QK1 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
VPS35Q96QK1 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
VPS35Q96QK1 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC19.18■□□□□ 0.66
VPS35Q96QK1 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
VPS35Q96QK1 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
VPS35Q96QK1 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC19.18■□□□□ 0.66
VPS35Q96QK1 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC19.18■□□□□ 0.66
VPS35Q96QK1 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
VPS35Q96QK1 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
VPS35Q96QK1 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
VPS35Q96QK1 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms