Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC18.5■□□□□ 0.55
VMP1Q96GC9 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC18.5■□□□□ 0.55
VMP1Q96GC9 AL359736.2-201ENST00000621992 437 ntBASIC18.5■□□□□ 0.55
VMP1Q96GC9 FAM197Y4-202ENST00000622692 608 ntBASIC18.5■□□□□ 0.55
VMP1Q96GC9 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC18.5■□□□□ 0.55
VMP1Q96GC9 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
VMP1Q96GC9 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
VMP1Q96GC9 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
VMP1Q96GC9 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VMP1Q96GC9 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC18.5■□□□□ 0.55
VMP1Q96GC9 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
VMP1Q96GC9 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VMP1Q96GC9 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VMP1Q96GC9 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC18.49■□□□□ 0.55
VMP1Q96GC9 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
VMP1Q96GC9 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
VMP1Q96GC9 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
VMP1Q96GC9 AC124283.5-201ENST00000624661 1809 ntBASIC18.49■□□□□ 0.55
VMP1Q96GC9 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
VMP1Q96GC9 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC18.49■□□□□ 0.55
VMP1Q96GC9 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
VMP1Q96GC9 NEFHP1-201ENST00000412845 2629 ntBASIC18.49■□□□□ 0.55
VMP1Q96GC9 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
VMP1Q96GC9 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC18.49■□□□□ 0.55
VMP1Q96GC9 AC239809.2-201ENST00000415381 517 ntBASIC18.49■□□□□ 0.55
VMP1Q96GC9 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC18.49■□□□□ 0.55
VMP1Q96GC9 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC18.49■□□□□ 0.55
VMP1Q96GC9 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC18.49■□□□□ 0.55
VMP1Q96GC9 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
VMP1Q96GC9 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC18.49■□□□□ 0.55
VMP1Q96GC9 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC18.49■□□□□ 0.55
VMP1Q96GC9 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC18.49■□□□□ 0.55
VMP1Q96GC9 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
VMP1Q96GC9 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
VMP1Q96GC9 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
VMP1Q96GC9 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
VMP1Q96GC9 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
VMP1Q96GC9 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC18.48■□□□□ 0.55
VMP1Q96GC9 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
VMP1Q96GC9 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
VMP1Q96GC9 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
VMP1Q96GC9 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
VMP1Q96GC9 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
VMP1Q96GC9 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
VMP1Q96GC9 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC18.48■□□□□ 0.55
VMP1Q96GC9 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
VMP1Q96GC9 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
VMP1Q96GC9 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
VMP1Q96GC9 CALM3-202ENST00000391918 702 ntTSL 2 BASIC18.48■□□□□ 0.55
VMP1Q96GC9 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC18.48■□□□□ 0.55
VMP1Q96GC9 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC18.48■□□□□ 0.55
VMP1Q96GC9 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC18.48■□□□□ 0.55
VMP1Q96GC9 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC18.48■□□□□ 0.55
VMP1Q96GC9 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
VMP1Q96GC9 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
VMP1Q96GC9 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC18.48■□□□□ 0.55
VMP1Q96GC9 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC18.48■□□□□ 0.55
VMP1Q96GC9 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
VMP1Q96GC9 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
VMP1Q96GC9 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
VMP1Q96GC9 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC18.48■□□□□ 0.55
VMP1Q96GC9 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
VMP1Q96GC9 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
VMP1Q96GC9 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC18.48■□□□□ 0.55
VMP1Q96GC9 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
VMP1Q96GC9 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
VMP1Q96GC9 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
VMP1Q96GC9 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
VMP1Q96GC9 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC18.47■□□□□ 0.55
VMP1Q96GC9 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
VMP1Q96GC9 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
VMP1Q96GC9 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
VMP1Q96GC9 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
VMP1Q96GC9 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
VMP1Q96GC9 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
VMP1Q96GC9 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
VMP1Q96GC9 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
VMP1Q96GC9 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC18.47■□□□□ 0.55
VMP1Q96GC9 ISG20-202ENST00000379224 540 ntTSL 3 BASIC18.47■□□□□ 0.55
VMP1Q96GC9 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
VMP1Q96GC9 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC18.47■□□□□ 0.55
VMP1Q96GC9 LY6E-205ENST00000519611 635 ntTSL 3 BASIC18.47■□□□□ 0.55
VMP1Q96GC9 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC18.47■□□□□ 0.55
VMP1Q96GC9 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC18.47■□□□□ 0.55
VMP1Q96GC9 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC18.47■□□□□ 0.55
VMP1Q96GC9 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC18.47■□□□□ 0.55
VMP1Q96GC9 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC18.47■□□□□ 0.55
VMP1Q96GC9 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
VMP1Q96GC9 AL023875.1-201ENST00000640777 796 ntBASIC18.47■□□□□ 0.55
VMP1Q96GC9 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC18.47■□□□□ 0.55
VMP1Q96GC9 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
VMP1Q96GC9 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
VMP1Q96GC9 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
VMP1Q96GC9 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
VMP1Q96GC9 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
VMP1Q96GC9 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC18.47■□□□□ 0.55
VMP1Q96GC9 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
VMP1Q96GC9 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
VMP1Q96GC9 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC18.46■□□□□ 0.55
VMP1Q96GC9 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms