Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 AC073210.2-201ENST00000430369 194 ntBASIC17.96■□□□□ 0.47
DEPDC4Q8N2C3 AC069152.1-201ENST00000438030 544 ntBASIC17.96■□□□□ 0.47
DEPDC4Q8N2C3 GUSBP6-202ENST00000438529 1198 ntBASIC17.96■□□□□ 0.47
DEPDC4Q8N2C3 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
DEPDC4Q8N2C3 CASP6-205ENST00000505486 538 ntTSL 4 BASIC17.96■□□□□ 0.47
DEPDC4Q8N2C3 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC17.96■□□□□ 0.47
DEPDC4Q8N2C3 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC17.96■□□□□ 0.47
DEPDC4Q8N2C3 ISCU-212ENST00000547005 795 ntTSL 3 BASIC17.96■□□□□ 0.47
DEPDC4Q8N2C3 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC17.96■□□□□ 0.47
DEPDC4Q8N2C3 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
DEPDC4Q8N2C3 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
DEPDC4Q8N2C3 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC17.96■□□□□ 0.47
DEPDC4Q8N2C3 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
DEPDC4Q8N2C3 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
DEPDC4Q8N2C3 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
DEPDC4Q8N2C3 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
DEPDC4Q8N2C3 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
DEPDC4Q8N2C3 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
DEPDC4Q8N2C3 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
DEPDC4Q8N2C3 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
DEPDC4Q8N2C3 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
DEPDC4Q8N2C3 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
DEPDC4Q8N2C3 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.46
DEPDC4Q8N2C3 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC17.95■□□□□ 0.46
DEPDC4Q8N2C3 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC17.95■□□□□ 0.46
DEPDC4Q8N2C3 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
DEPDC4Q8N2C3 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC17.95■□□□□ 0.46
DEPDC4Q8N2C3 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC17.95■□□□□ 0.46
DEPDC4Q8N2C3 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC17.95■□□□□ 0.46
DEPDC4Q8N2C3 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
DEPDC4Q8N2C3 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC17.95■□□□□ 0.46
DEPDC4Q8N2C3 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
DEPDC4Q8N2C3 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
DEPDC4Q8N2C3 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
DEPDC4Q8N2C3 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC17.95■□□□□ 0.46
DEPDC4Q8N2C3 MIPEPP3-201ENST00000412105 444 ntBASIC17.95■□□□□ 0.46
DEPDC4Q8N2C3 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC17.95■□□□□ 0.46
DEPDC4Q8N2C3 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
DEPDC4Q8N2C3 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
DEPDC4Q8N2C3 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
DEPDC4Q8N2C3 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
DEPDC4Q8N2C3 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
DEPDC4Q8N2C3 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
DEPDC4Q8N2C3 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
DEPDC4Q8N2C3 AC005082.1-201ENST00000413042 2259 ntBASIC17.95■□□□□ 0.46
DEPDC4Q8N2C3 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
DEPDC4Q8N2C3 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
DEPDC4Q8N2C3 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
DEPDC4Q8N2C3 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
DEPDC4Q8N2C3 CROCCP3-202ENST00000420820 1947 ntBASIC17.94■□□□□ 0.46
DEPDC4Q8N2C3 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
DEPDC4Q8N2C3 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
DEPDC4Q8N2C3 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
DEPDC4Q8N2C3 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
DEPDC4Q8N2C3 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
DEPDC4Q8N2C3 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
DEPDC4Q8N2C3 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
DEPDC4Q8N2C3 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC17.94■□□□□ 0.46
DEPDC4Q8N2C3 BX276092.2-201ENST00000417668 665 ntBASIC17.94■□□□□ 0.46
DEPDC4Q8N2C3 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC17.94■□□□□ 0.46
DEPDC4Q8N2C3 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
DEPDC4Q8N2C3 CD99P1-205ENST00000527459 561 ntBASIC17.94■□□□□ 0.46
DEPDC4Q8N2C3 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
DEPDC4Q8N2C3 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC17.94■□□□□ 0.46
DEPDC4Q8N2C3 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC17.94■□□□□ 0.46
DEPDC4Q8N2C3 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
DEPDC4Q8N2C3 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC17.94■□□□□ 0.46
DEPDC4Q8N2C3 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
DEPDC4Q8N2C3 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
DEPDC4Q8N2C3 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
DEPDC4Q8N2C3 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC17.94■□□□□ 0.46
DEPDC4Q8N2C3 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
DEPDC4Q8N2C3 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
DEPDC4Q8N2C3 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
DEPDC4Q8N2C3 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
DEPDC4Q8N2C3 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
DEPDC4Q8N2C3 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
DEPDC4Q8N2C3 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
DEPDC4Q8N2C3 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
DEPDC4Q8N2C3 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC17.93■□□□□ 0.46
DEPDC4Q8N2C3 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
DEPDC4Q8N2C3 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
DEPDC4Q8N2C3 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
DEPDC4Q8N2C3 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
DEPDC4Q8N2C3 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
DEPDC4Q8N2C3 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
DEPDC4Q8N2C3 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC17.93■□□□□ 0.46
DEPDC4Q8N2C3 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC17.93■□□□□ 0.46
DEPDC4Q8N2C3 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
DEPDC4Q8N2C3 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
DEPDC4Q8N2C3 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
DEPDC4Q8N2C3 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
DEPDC4Q8N2C3 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
DEPDC4Q8N2C3 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
DEPDC4Q8N2C3 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC17.93■□□□□ 0.46
DEPDC4Q8N2C3 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC17.93■□□□□ 0.46
DEPDC4Q8N2C3 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
DEPDC4Q8N2C3 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
DEPDC4Q8N2C3 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
DEPDC4Q8N2C3 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms