Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CCDC28AQ8IWP9 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC16.16■□□□□ 0.18
CCDC28AQ8IWP9 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC16.16■□□□□ 0.18
CCDC28AQ8IWP9 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
CCDC28AQ8IWP9 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC16.15■□□□□ 0.18
CCDC28AQ8IWP9 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
CCDC28AQ8IWP9 AC003102.1-202ENST00000563394 1796 ntBASIC16.15■□□□□ 0.18
CCDC28AQ8IWP9 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC16.15■□□□□ 0.18
CCDC28AQ8IWP9 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC28AQ8IWP9 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC28AQ8IWP9 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC28AQ8IWP9 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
CCDC28AQ8IWP9 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC28AQ8IWP9 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
CCDC28AQ8IWP9 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
CCDC28AQ8IWP9 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC28AQ8IWP9 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
CCDC28AQ8IWP9 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC28AQ8IWP9 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC16.15■□□□□ 0.18
CCDC28AQ8IWP9 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC28AQ8IWP9 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC28AQ8IWP9 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC28AQ8IWP9 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC28AQ8IWP9 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC28AQ8IWP9 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC28AQ8IWP9 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC16.15■□□□□ 0.18
CCDC28AQ8IWP9 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC28AQ8IWP9 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC16.15■□□□□ 0.18
CCDC28AQ8IWP9 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC28AQ8IWP9 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC16.15■□□□□ 0.18
CCDC28AQ8IWP9 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC16.15■□□□□ 0.18
CCDC28AQ8IWP9 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC28AQ8IWP9 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC16.15■□□□□ 0.18
CCDC28AQ8IWP9 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC28AQ8IWP9 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC16.15■□□□□ 0.18
CCDC28AQ8IWP9 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC16.15■□□□□ 0.18
CCDC28AQ8IWP9 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC28AQ8IWP9 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC16.15■□□□□ 0.18
CCDC28AQ8IWP9 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC28AQ8IWP9 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC16.15■□□□□ 0.18
CCDC28AQ8IWP9 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC28AQ8IWP9 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC16.15■□□□□ 0.18
CCDC28AQ8IWP9 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
CCDC28AQ8IWP9 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.18
CCDC28AQ8IWP9 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CCDC28AQ8IWP9 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CCDC28AQ8IWP9 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC16.14■□□□□ 0.17
CCDC28AQ8IWP9 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CCDC28AQ8IWP9 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CCDC28AQ8IWP9 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CCDC28AQ8IWP9 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CCDC28AQ8IWP9 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CCDC28AQ8IWP9 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
CCDC28AQ8IWP9 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
CCDC28AQ8IWP9 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CCDC28AQ8IWP9 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC16.14■□□□□ 0.17
CCDC28AQ8IWP9 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC16.14■□□□□ 0.17
CCDC28AQ8IWP9 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CCDC28AQ8IWP9 AL118508.1-201ENST00000613502 2345 ntBASIC16.14■□□□□ 0.17
CCDC28AQ8IWP9 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC16.14■□□□□ 0.17
CCDC28AQ8IWP9 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC16.14■□□□□ 0.17
CCDC28AQ8IWP9 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CCDC28AQ8IWP9 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC16.14■□□□□ 0.17
CCDC28AQ8IWP9 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
CCDC28AQ8IWP9 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
CCDC28AQ8IWP9 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC16.14■□□□□ 0.17
CCDC28AQ8IWP9 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
CCDC28AQ8IWP9 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CCDC28AQ8IWP9 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CCDC28AQ8IWP9 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CCDC28AQ8IWP9 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CCDC28AQ8IWP9 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CCDC28AQ8IWP9 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC16.13■□□□□ 0.17
CCDC28AQ8IWP9 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
CCDC28AQ8IWP9 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC16.13■□□□□ 0.17
CCDC28AQ8IWP9 LINC00896-202ENST00000609602 2128 ntBASIC16.13■□□□□ 0.17
CCDC28AQ8IWP9 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC16.13■□□□□ 0.17
CCDC28AQ8IWP9 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC16.13■□□□□ 0.17
CCDC28AQ8IWP9 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC16.13■□□□□ 0.17
CCDC28AQ8IWP9 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CCDC28AQ8IWP9 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CCDC28AQ8IWP9 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CCDC28AQ8IWP9 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CCDC28AQ8IWP9 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CCDC28AQ8IWP9 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC16.13■□□□□ 0.17
CCDC28AQ8IWP9 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CCDC28AQ8IWP9 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
CCDC28AQ8IWP9 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
CCDC28AQ8IWP9 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CCDC28AQ8IWP9 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
CCDC28AQ8IWP9 CROCCP1-201ENST00000426910 5675 ntBASIC16.13■□□□□ 0.17
CCDC28AQ8IWP9 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC16.13■□□□□ 0.17
CCDC28AQ8IWP9 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC16.13■□□□□ 0.17
CCDC28AQ8IWP9 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
CCDC28AQ8IWP9 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC16.13■□□□□ 0.17
CCDC28AQ8IWP9 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
CCDC28AQ8IWP9 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CCDC28AQ8IWP9 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
CCDC28AQ8IWP9 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CCDC28AQ8IWP9 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 18.9 ms