Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CCDC60Q8IWA6 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC21.54■■□□□ 1.04
CCDC60Q8IWA6 PWWP2AP1-201ENST00000429776 2273 ntBASIC21.54■■□□□ 1.04
CCDC60Q8IWA6 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CCDC60Q8IWA6 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CCDC60Q8IWA6 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CCDC60Q8IWA6 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CCDC60Q8IWA6 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CCDC60Q8IWA6 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC21.54■■□□□ 1.04
CCDC60Q8IWA6 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CCDC60Q8IWA6 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC21.54■■□□□ 1.04
CCDC60Q8IWA6 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC21.54■■□□□ 1.04
CCDC60Q8IWA6 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC21.54■■□□□ 1.04
CCDC60Q8IWA6 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC21.54■■□□□ 1.04
CCDC60Q8IWA6 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC21.54■■□□□ 1.04
CCDC60Q8IWA6 P4HB-223ENST00000576390 439 ntTSL 4 BASIC21.54■■□□□ 1.04
CCDC60Q8IWA6 CYGB-204ENST00000589342 815 ntTSL 3 BASIC21.54■■□□□ 1.04
CCDC60Q8IWA6 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CCDC60Q8IWA6 AC005363.2-201ENST00000618631 242 ntBASIC21.54■■□□□ 1.04
CCDC60Q8IWA6 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CCDC60Q8IWA6 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC21.54■■□□□ 1.04
CCDC60Q8IWA6 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC21.54■■□□□ 1.04
CCDC60Q8IWA6 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC21.54■■□□□ 1.04
CCDC60Q8IWA6 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CCDC60Q8IWA6 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC21.54■■□□□ 1.04
CCDC60Q8IWA6 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC21.54■■□□□ 1.04
CCDC60Q8IWA6 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC21.53■■□□□ 1.04
CCDC60Q8IWA6 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
CCDC60Q8IWA6 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
CCDC60Q8IWA6 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC21.53■■□□□ 1.04
CCDC60Q8IWA6 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
CCDC60Q8IWA6 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CCDC60Q8IWA6 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
CCDC60Q8IWA6 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
CCDC60Q8IWA6 EGLN1P1-201ENST00000531623 762 ntBASIC21.53■■□□□ 1.04
CCDC60Q8IWA6 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC21.53■■□□□ 1.04
CCDC60Q8IWA6 RN7SL850P-201ENST00000579959 291 ntBASIC21.53■■□□□ 1.04
CCDC60Q8IWA6 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC21.53■■□□□ 1.04
CCDC60Q8IWA6 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CCDC60Q8IWA6 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.04
CCDC60Q8IWA6 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC21.53■■□□□ 1.04
CCDC60Q8IWA6 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CCDC60Q8IWA6 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
CCDC60Q8IWA6 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
CCDC60Q8IWA6 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
CCDC60Q8IWA6 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC21.52■■□□□ 1.04
CCDC60Q8IWA6 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC21.52■■□□□ 1.04
CCDC60Q8IWA6 TREX1-205ENST00000625293 1783 ntBASIC21.52■■□□□ 1.04
CCDC60Q8IWA6 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CCDC60Q8IWA6 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC21.52■■□□□ 1.04
CCDC60Q8IWA6 AC005521.1-201ENST00000393351 872 ntBASIC21.52■■□□□ 1.04
CCDC60Q8IWA6 AC113347.1-201ENST00000413321 391 ntBASIC21.52■■□□□ 1.04
CCDC60Q8IWA6 SLC25A3P1-201ENST00000443844 931 ntBASIC21.52■■□□□ 1.04
CCDC60Q8IWA6 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
CCDC60Q8IWA6 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC21.52■■□□□ 1.04
CCDC60Q8IWA6 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CCDC60Q8IWA6 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
CCDC60Q8IWA6 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC21.52■■□□□ 1.04
CCDC60Q8IWA6 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.03
CCDC60Q8IWA6 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC21.52■■□□□ 1.03
CCDC60Q8IWA6 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
CCDC60Q8IWA6 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.03
CCDC60Q8IWA6 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC21.52■■□□□ 1.03
CCDC60Q8IWA6 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CCDC60Q8IWA6 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC21.51■■□□□ 1.03
CCDC60Q8IWA6 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CCDC60Q8IWA6 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC21.51■■□□□ 1.03
CCDC60Q8IWA6 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
CCDC60Q8IWA6 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
CCDC60Q8IWA6 ECEL1P2-202ENST00000465689 757 ntBASIC21.51■■□□□ 1.03
CCDC60Q8IWA6 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CCDC60Q8IWA6 SDHAP1-207ENST00000440850 2000 ntBASIC21.51■■□□□ 1.03
CCDC60Q8IWA6 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CCDC60Q8IWA6 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
CCDC60Q8IWA6 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CCDC60Q8IWA6 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CCDC60Q8IWA6 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC21.5■■□□□ 1.03
CCDC60Q8IWA6 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC21.5■■□□□ 1.03
CCDC60Q8IWA6 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CCDC60Q8IWA6 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CCDC60Q8IWA6 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
CCDC60Q8IWA6 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CCDC60Q8IWA6 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CCDC60Q8IWA6 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC21.5■■□□□ 1.03
CCDC60Q8IWA6 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CCDC60Q8IWA6 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CCDC60Q8IWA6 HIST1H2APS4-201ENST00000362070 348 ntBASIC21.5■■□□□ 1.03
CCDC60Q8IWA6 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CCDC60Q8IWA6 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CCDC60Q8IWA6 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
CCDC60Q8IWA6 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
CCDC60Q8IWA6 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CCDC60Q8IWA6 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC21.5■■□□□ 1.03
CCDC60Q8IWA6 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC21.5■■□□□ 1.03
CCDC60Q8IWA6 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC21.5■■□□□ 1.03
CCDC60Q8IWA6 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC21.5■■□□□ 1.03
CCDC60Q8IWA6 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
CCDC60Q8IWA6 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CCDC60Q8IWA6 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC21.5■■□□□ 1.03
CCDC60Q8IWA6 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms