Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC23.71■■□□□ 1.39
USP48Q86UV5 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
USP48Q86UV5 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC23.71■■□□□ 1.39
USP48Q86UV5 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC23.71■■□□□ 1.39
USP48Q86UV5 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC23.71■■□□□ 1.39
USP48Q86UV5 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
USP48Q86UV5 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC23.7■■□□□ 1.39
USP48Q86UV5 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
USP48Q86UV5 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
USP48Q86UV5 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC23.7■■□□□ 1.38
USP48Q86UV5 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
USP48Q86UV5 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
USP48Q86UV5 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC23.7■■□□□ 1.38
USP48Q86UV5 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC23.7■■□□□ 1.38
USP48Q86UV5 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC23.7■■□□□ 1.38
USP48Q86UV5 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC23.7■■□□□ 1.38
USP48Q86UV5 B3GAT3P1-201ENST00000471720 806 ntBASIC23.7■■□□□ 1.38
USP48Q86UV5 CLN6-204ENST00000564752 900 ntTSL 3 BASIC23.7■■□□□ 1.38
USP48Q86UV5 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
USP48Q86UV5 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC23.7■■□□□ 1.38
USP48Q86UV5 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC23.7■■□□□ 1.38
USP48Q86UV5 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC23.7■■□□□ 1.38
USP48Q86UV5 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC23.69■■□□□ 1.38
USP48Q86UV5 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC23.69■■□□□ 1.38
USP48Q86UV5 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC23.69■■□□□ 1.38
USP48Q86UV5 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC23.69■■□□□ 1.38
USP48Q86UV5 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
USP48Q86UV5 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
USP48Q86UV5 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC23.69■■□□□ 1.38
USP48Q86UV5 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC23.69■■□□□ 1.38
USP48Q86UV5 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
USP48Q86UV5 HLA-G-202ENST00000376815 851 ntBASIC23.69■■□□□ 1.38
USP48Q86UV5 HLA-G-203ENST00000376818 1127 ntBASIC23.69■■□□□ 1.38
USP48Q86UV5 AC139887.4-201ENST00000607877 719 ntBASIC23.69■■□□□ 1.38
USP48Q86UV5 MYC-208ENST00000641036 567 ntBASIC23.69■■□□□ 1.38
USP48Q86UV5 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC23.69■■□□□ 1.38
USP48Q86UV5 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC23.69■■□□□ 1.38
USP48Q86UV5 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC23.69■■□□□ 1.38
USP48Q86UV5 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC23.69■■□□□ 1.38
USP48Q86UV5 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC23.69■■□□□ 1.38
USP48Q86UV5 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
USP48Q86UV5 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC23.69■■□□□ 1.38
USP48Q86UV5 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
USP48Q86UV5 SAPCD2P2-201ENST00000431719 1174 ntBASIC23.68■■□□□ 1.38
USP48Q86UV5 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC23.68■■□□□ 1.38
USP48Q86UV5 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC23.68■■□□□ 1.38
USP48Q86UV5 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC23.68■■□□□ 1.38
USP48Q86UV5 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC23.68■■□□□ 1.38
USP48Q86UV5 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC23.68■■□□□ 1.38
USP48Q86UV5 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC23.68■■□□□ 1.38
USP48Q86UV5 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
USP48Q86UV5 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC23.68■■□□□ 1.38
USP48Q86UV5 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC23.68■■□□□ 1.38
USP48Q86UV5 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC23.68■■□□□ 1.38
USP48Q86UV5 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
USP48Q86UV5 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
USP48Q86UV5 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC23.68■■□□□ 1.38
USP48Q86UV5 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
USP48Q86UV5 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC23.68■■□□□ 1.38
USP48Q86UV5 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
USP48Q86UV5 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
USP48Q86UV5 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC23.67■■□□□ 1.38
USP48Q86UV5 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC23.67■■□□□ 1.38
USP48Q86UV5 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC23.67■■□□□ 1.38
USP48Q86UV5 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
USP48Q86UV5 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
USP48Q86UV5 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
USP48Q86UV5 FAM8A6P-201ENST00000407496 1135 ntBASIC23.67■■□□□ 1.38
USP48Q86UV5 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC23.67■■□□□ 1.38
USP48Q86UV5 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC23.67■■□□□ 1.38
USP48Q86UV5 FDX2-206ENST00000492239 773 ntTSL 2 BASIC23.67■■□□□ 1.38
USP48Q86UV5 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC23.67■■□□□ 1.38
USP48Q86UV5 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC23.67■■□□□ 1.38
USP48Q86UV5 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
USP48Q86UV5 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC23.67■■□□□ 1.38
USP48Q86UV5 AL445675.2-201ENST00000620291 557 ntBASIC23.67■■□□□ 1.38
USP48Q86UV5 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC23.67■■□□□ 1.38
USP48Q86UV5 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
USP48Q86UV5 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
USP48Q86UV5 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
USP48Q86UV5 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC23.67■■□□□ 1.38
USP48Q86UV5 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC23.67■■□□□ 1.38
USP48Q86UV5 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC23.67■■□□□ 1.38
USP48Q86UV5 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
USP48Q86UV5 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC23.66■■□□□ 1.38
USP48Q86UV5 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC23.66■■□□□ 1.38
USP48Q86UV5 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC23.66■■□□□ 1.38
USP48Q86UV5 AC026271.3-201ENST00000571884 352 ntBASIC23.66■■□□□ 1.38
USP48Q86UV5 DGCR10-201ENST00000609839 495 ntBASIC23.66■■□□□ 1.38
USP48Q86UV5 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC23.66■■□□□ 1.38
USP48Q86UV5 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
USP48Q86UV5 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
USP48Q86UV5 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC23.65■■□□□ 1.38
USP48Q86UV5 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
USP48Q86UV5 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC23.65■■□□□ 1.38
USP48Q86UV5 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC23.65■■□□□ 1.38
USP48Q86UV5 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
USP48Q86UV5 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC23.65■■□□□ 1.38
USP48Q86UV5 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC23.65■■□□□ 1.38
USP48Q86UV5 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC23.65■■□□□ 1.38
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms