Protein–RNA interactions for Protein: Q6VVB1

NHLRC1, E3 ubiquitin-protein ligase NHLRC1, humanhuman

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NHLRC1Q6VVB1 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
NHLRC1Q6VVB1 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
NHLRC1Q6VVB1 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
NHLRC1Q6VVB1 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC17.38■□□□□ 0.37
NHLRC1Q6VVB1 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC17.37■□□□□ 0.37
NHLRC1Q6VVB1 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
NHLRC1Q6VVB1 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC17.37■□□□□ 0.37
NHLRC1Q6VVB1 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
NHLRC1Q6VVB1 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
NHLRC1Q6VVB1 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC17.37■□□□□ 0.37
NHLRC1Q6VVB1 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
NHLRC1Q6VVB1 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC17.37■□□□□ 0.37
NHLRC1Q6VVB1 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
NHLRC1Q6VVB1 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC17.37■□□□□ 0.37
NHLRC1Q6VVB1 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
NHLRC1Q6VVB1 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC17.37■□□□□ 0.37
NHLRC1Q6VVB1 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC17.37■□□□□ 0.37
NHLRC1Q6VVB1 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC17.37■□□□□ 0.37
NHLRC1Q6VVB1 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC17.37■□□□□ 0.37
NHLRC1Q6VVB1 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC17.37■□□□□ 0.37
NHLRC1Q6VVB1 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC17.37■□□□□ 0.37
NHLRC1Q6VVB1 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC17.37■□□□□ 0.37
NHLRC1Q6VVB1 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC17.37■□□□□ 0.37
NHLRC1Q6VVB1 KRT8P8-201ENST00000434750 1448 ntBASIC17.37■□□□□ 0.37
NHLRC1Q6VVB1 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
NHLRC1Q6VVB1 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC17.37■□□□□ 0.37
NHLRC1Q6VVB1 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
NHLRC1Q6VVB1 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
NHLRC1Q6VVB1 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
NHLRC1Q6VVB1 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
NHLRC1Q6VVB1 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC17.36■□□□□ 0.37
NHLRC1Q6VVB1 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
NHLRC1Q6VVB1 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC17.36■□□□□ 0.37
NHLRC1Q6VVB1 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC17.36■□□□□ 0.37
NHLRC1Q6VVB1 SERF2-207ENST00000409614 582 ntTSL 2 BASIC17.36■□□□□ 0.37
NHLRC1Q6VVB1 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC17.36■□□□□ 0.37
NHLRC1Q6VVB1 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC17.36■□□□□ 0.37
NHLRC1Q6VVB1 RN7SL471P-201ENST00000580476 299 ntBASIC17.36■□□□□ 0.37
NHLRC1Q6VVB1 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
NHLRC1Q6VVB1 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
NHLRC1Q6VVB1 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
NHLRC1Q6VVB1 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
NHLRC1Q6VVB1 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
NHLRC1Q6VVB1 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC17.36■□□□□ 0.37
NHLRC1Q6VVB1 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
NHLRC1Q6VVB1 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
NHLRC1Q6VVB1 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC17.36■□□□□ 0.37
NHLRC1Q6VVB1 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC17.36■□□□□ 0.37
NHLRC1Q6VVB1 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC17.36■□□□□ 0.37
NHLRC1Q6VVB1 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC17.36■□□□□ 0.37
NHLRC1Q6VVB1 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC17.36■□□□□ 0.37
NHLRC1Q6VVB1 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
NHLRC1Q6VVB1 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
NHLRC1Q6VVB1 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
NHLRC1Q6VVB1 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
NHLRC1Q6VVB1 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
NHLRC1Q6VVB1 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
NHLRC1Q6VVB1 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
NHLRC1Q6VVB1 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC17.35■□□□□ 0.37
NHLRC1Q6VVB1 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
NHLRC1Q6VVB1 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC17.35■□□□□ 0.37
NHLRC1Q6VVB1 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
NHLRC1Q6VVB1 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
NHLRC1Q6VVB1 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC17.35■□□□□ 0.37
NHLRC1Q6VVB1 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC17.35■□□□□ 0.37
NHLRC1Q6VVB1 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
NHLRC1Q6VVB1 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC17.35■□□□□ 0.37
NHLRC1Q6VVB1 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC17.35■□□□□ 0.37
NHLRC1Q6VVB1 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
NHLRC1Q6VVB1 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
NHLRC1Q6VVB1 AC073648.6-201ENST00000641589 218 ntBASIC17.35■□□□□ 0.37
NHLRC1Q6VVB1 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
NHLRC1Q6VVB1 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC17.35■□□□□ 0.37
NHLRC1Q6VVB1 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC17.35■□□□□ 0.37
NHLRC1Q6VVB1 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
NHLRC1Q6VVB1 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
NHLRC1Q6VVB1 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC17.35■□□□□ 0.37
NHLRC1Q6VVB1 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
NHLRC1Q6VVB1 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
NHLRC1Q6VVB1 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
NHLRC1Q6VVB1 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
NHLRC1Q6VVB1 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
NHLRC1Q6VVB1 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
NHLRC1Q6VVB1 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC17.34■□□□□ 0.37
NHLRC1Q6VVB1 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
NHLRC1Q6VVB1 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
NHLRC1Q6VVB1 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
NHLRC1Q6VVB1 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC17.34■□□□□ 0.37
NHLRC1Q6VVB1 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC17.34■□□□□ 0.37
NHLRC1Q6VVB1 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC17.34■□□□□ 0.37
NHLRC1Q6VVB1 POU5F1P3-201ENST00000428824 1078 ntBASIC17.34■□□□□ 0.37
NHLRC1Q6VVB1 AC133681.1-201ENST00000465482 601 ntBASIC17.34■□□□□ 0.37
NHLRC1Q6VVB1 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
NHLRC1Q6VVB1 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
NHLRC1Q6VVB1 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC17.34■□□□□ 0.37
NHLRC1Q6VVB1 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC17.34■□□□□ 0.37
NHLRC1Q6VVB1 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
NHLRC1Q6VVB1 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
NHLRC1Q6VVB1 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC17.34■□□□□ 0.37
NHLRC1Q6VVB1 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC17.34■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms