Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
PCDH1Q08174 C1QL1P1-201ENST00000568105 661 ntBASIC18.66■□□□□ 0.58
PCDH1Q08174 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PCDH1Q08174 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC18.66■□□□□ 0.58
PCDH1Q08174 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
PCDH1Q08174 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC18.66■□□□□ 0.58
PCDH1Q08174 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
PCDH1Q08174 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
PCDH1Q08174 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC18.65■□□□□ 0.58
PCDH1Q08174 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC18.65■□□□□ 0.58
PCDH1Q08174 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PCDH1Q08174 STX6-204ENST00000542060 4809 ntTSL 2 BASIC18.65■□□□□ 0.58
PCDH1Q08174 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PCDH1Q08174 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
PCDH1Q08174 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC18.65■□□□□ 0.58
PCDH1Q08174 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
PCDH1Q08174 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PCDH1Q08174 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
PCDH1Q08174 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC18.65■□□□□ 0.58
PCDH1Q08174 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC18.65■□□□□ 0.58
PCDH1Q08174 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC18.65■□□□□ 0.58
PCDH1Q08174 AC233263.1-201ENST00000578059 224 ntBASIC18.65■□□□□ 0.58
PCDH1Q08174 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC18.65■□□□□ 0.58
PCDH1Q08174 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
PCDH1Q08174 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PCDH1Q08174 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PCDH1Q08174 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PCDH1Q08174 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
PCDH1Q08174 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
PCDH1Q08174 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PCDH1Q08174 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
PCDH1Q08174 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC18.64■□□□□ 0.58
PCDH1Q08174 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.58
PCDH1Q08174 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC18.64■□□□□ 0.58
PCDH1Q08174 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
PCDH1Q08174 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
PCDH1Q08174 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
PCDH1Q08174 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC18.64■□□□□ 0.58
PCDH1Q08174 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC18.64■□□□□ 0.58
PCDH1Q08174 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PCDH1Q08174 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC18.64■□□□□ 0.57
PCDH1Q08174 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
PCDH1Q08174 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
PCDH1Q08174 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PCDH1Q08174 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
PCDH1Q08174 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
PCDH1Q08174 SERF2-207ENST00000409614 582 ntTSL 2 BASIC18.64■□□□□ 0.57
PCDH1Q08174 DENND3-207ENST00000518347 850 ntTSL 2 BASIC18.64■□□□□ 0.57
PCDH1Q08174 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC18.64■□□□□ 0.57
PCDH1Q08174 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC18.64■□□□□ 0.57
PCDH1Q08174 RN7SL471P-201ENST00000580476 299 ntBASIC18.64■□□□□ 0.57
PCDH1Q08174 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC18.64■□□□□ 0.57
PCDH1Q08174 AC004264.1-201ENST00000608354 794 ntBASIC18.64■□□□□ 0.57
PCDH1Q08174 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC18.64■□□□□ 0.57
PCDH1Q08174 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC18.64■□□□□ 0.57
PCDH1Q08174 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PCDH1Q08174 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
PCDH1Q08174 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PCDH1Q08174 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PCDH1Q08174 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PCDH1Q08174 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
PCDH1Q08174 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC18.64■□□□□ 0.57
PCDH1Q08174 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC18.64■□□□□ 0.57
PCDH1Q08174 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
PCDH1Q08174 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PCDH1Q08174 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC18.63■□□□□ 0.57
PCDH1Q08174 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PCDH1Q08174 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC18.63■□□□□ 0.57
PCDH1Q08174 SDHAP1-207ENST00000440850 2000 ntBASIC18.63■□□□□ 0.57
PCDH1Q08174 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
PCDH1Q08174 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
PCDH1Q08174 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PCDH1Q08174 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC18.63■□□□□ 0.57
PCDH1Q08174 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC18.63■□□□□ 0.57
PCDH1Q08174 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
PCDH1Q08174 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC18.63■□□□□ 0.57
PCDH1Q08174 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
PCDH1Q08174 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
PCDH1Q08174 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
PCDH1Q08174 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
PCDH1Q08174 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
PCDH1Q08174 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
PCDH1Q08174 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC18.63■□□□□ 0.57
PCDH1Q08174 TEX21P-204ENST00000641479 1693 ntBASIC18.63■□□□□ 0.57
PCDH1Q08174 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
PCDH1Q08174 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC18.62■□□□□ 0.57
PCDH1Q08174 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
PCDH1Q08174 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
PCDH1Q08174 AL020996.1-203ENST00000536896 2307 ntBASIC18.62■□□□□ 0.57
PCDH1Q08174 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PCDH1Q08174 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PCDH1Q08174 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC18.62■□□□□ 0.57
PCDH1Q08174 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
PCDH1Q08174 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC18.62■□□□□ 0.57
PCDH1Q08174 KRT16P5-201ENST00000455284 522 ntBASIC18.62■□□□□ 0.57
PCDH1Q08174 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
PCDH1Q08174 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
PCDH1Q08174 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
PCDH1Q08174 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
PCDH1Q08174 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms