Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC17.93■□□□□ 0.46
RNF4P78317 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC17.93■□□□□ 0.46
RNF4P78317 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC17.93■□□□□ 0.46
RNF4P78317 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
RNF4P78317 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC17.93■□□□□ 0.46
RNF4P78317 AL355075.4-201ENST00000554988 638 ntBASIC17.93■□□□□ 0.46
RNF4P78317 SNX21-213ENST00000614929 587 ntTSL 5 BASIC17.93■□□□□ 0.46
RNF4P78317 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
RNF4P78317 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
RNF4P78317 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
RNF4P78317 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC17.93■□□□□ 0.46
RNF4P78317 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC17.93■□□□□ 0.46
RNF4P78317 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
RNF4P78317 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
RNF4P78317 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC17.92■□□□□ 0.46
RNF4P78317 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
RNF4P78317 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
RNF4P78317 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
RNF4P78317 PTPA-216ENST00000432651 857 ntTSL 2 BASIC17.92■□□□□ 0.46
RNF4P78317 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC17.92■□□□□ 0.46
RNF4P78317 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC17.92■□□□□ 0.46
RNF4P78317 MIR6786-201ENST00000616843 113 ntBASIC17.92■□□□□ 0.46
RNF4P78317 ADM-207ENST00000530439 1839 ntTSL 2 BASIC17.92■□□□□ 0.46
RNF4P78317 FSCN1P1-201ENST00000568912 1481 ntBASIC17.92■□□□□ 0.46
RNF4P78317 AFG3L1P-217ENST00000557444 2447 ntBASIC17.92■□□□□ 0.46
RNF4P78317 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC17.92■□□□□ 0.46
RNF4P78317 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
RNF4P78317 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
RNF4P78317 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
RNF4P78317 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
RNF4P78317 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
RNF4P78317 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
RNF4P78317 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
RNF4P78317 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC17.91■□□□□ 0.46
RNF4P78317 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
RNF4P78317 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
RNF4P78317 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC17.91■□□□□ 0.46
RNF4P78317 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC17.91■□□□□ 0.46
RNF4P78317 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC17.91■□□□□ 0.46
RNF4P78317 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC17.91■□□□□ 0.46
RNF4P78317 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC17.91■□□□□ 0.46
RNF4P78317 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC17.91■□□□□ 0.46
RNF4P78317 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC17.91■□□□□ 0.46
RNF4P78317 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
RNF4P78317 ZNF815P-204ENST00000434898 1737 ntBASIC17.91■□□□□ 0.46
RNF4P78317 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
RNF4P78317 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
RNF4P78317 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
RNF4P78317 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC17.91■□□□□ 0.46
RNF4P78317 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC17.91■□□□□ 0.46
RNF4P78317 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
RNF4P78317 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
RNF4P78317 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC17.91■□□□□ 0.46
RNF4P78317 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
RNF4P78317 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
RNF4P78317 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
RNF4P78317 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC17.91■□□□□ 0.46
RNF4P78317 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
RNF4P78317 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC17.91■□□□□ 0.46
RNF4P78317 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
RNF4P78317 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC17.9■□□□□ 0.46
RNF4P78317 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
RNF4P78317 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
RNF4P78317 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC17.9■□□□□ 0.46
RNF4P78317 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC17.9■□□□□ 0.46
RNF4P78317 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
RNF4P78317 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
RNF4P78317 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC17.9■□□□□ 0.46
RNF4P78317 MESTP1-201ENST00000404287 994 ntBASIC17.9■□□□□ 0.46
RNF4P78317 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC17.9■□□□□ 0.46
RNF4P78317 TSPY15P-201ENST00000457163 923 ntBASIC17.9■□□□□ 0.46
RNF4P78317 B3GAT3P1-201ENST00000471720 806 ntBASIC17.9■□□□□ 0.46
RNF4P78317 AC011506.1-201ENST00000474329 610 ntBASIC17.9■□□□□ 0.46
RNF4P78317 Z85996.1-201ENST00000494644 937 ntBASIC17.9■□□□□ 0.46
RNF4P78317 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
RNF4P78317 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC17.9■□□□□ 0.46
RNF4P78317 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC17.9■□□□□ 0.46
RNF4P78317 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
RNF4P78317 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
RNF4P78317 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
RNF4P78317 RCC2P6-201ENST00000526625 1557 ntBASIC17.9■□□□□ 0.46
RNF4P78317 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
RNF4P78317 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC17.9■□□□□ 0.46
RNF4P78317 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC17.9■□□□□ 0.46
RNF4P78317 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC17.9■□□□□ 0.46
RNF4P78317 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
RNF4P78317 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
RNF4P78317 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
RNF4P78317 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC17.9■□□□□ 0.46
RNF4P78317 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
RNF4P78317 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC17.9■□□□□ 0.46
RNF4P78317 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
RNF4P78317 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC17.89■□□□□ 0.46
RNF4P78317 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
RNF4P78317 AC104417.2-201ENST00000562989 1793 ntBASIC17.89■□□□□ 0.45
RNF4P78317 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
RNF4P78317 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
RNF4P78317 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC17.89■□□□□ 0.45
RNF4P78317 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
RNF4P78317 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 10.6 ms