Protein–RNA interactions for Protein: P62310

LSM3, U6 snRNA-associated Sm-like protein LSm3, humanhuman

Known RBP Predictions only

Length 102 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3P62310 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
LSM3P62310 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC17.43■□□□□ 0.38
LSM3P62310 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC17.43■□□□□ 0.38
LSM3P62310 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC17.43■□□□□ 0.38
LSM3P62310 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
LSM3P62310 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC17.43■□□□□ 0.38
LSM3P62310 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC17.43■□□□□ 0.38
LSM3P62310 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC17.43■□□□□ 0.38
LSM3P62310 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC17.43■□□□□ 0.38
LSM3P62310 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
LSM3P62310 Z98044.1-201ENST00000632503 1764 ntBASIC17.43■□□□□ 0.38
LSM3P62310 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
LSM3P62310 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
LSM3P62310 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LSM3P62310 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LSM3P62310 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC17.43■□□□□ 0.38
LSM3P62310 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
LSM3P62310 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
LSM3P62310 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
LSM3P62310 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
LSM3P62310 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
LSM3P62310 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
LSM3P62310 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
LSM3P62310 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC17.42■□□□□ 0.38
LSM3P62310 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
LSM3P62310 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC17.42■□□□□ 0.38
LSM3P62310 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
LSM3P62310 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC17.42■□□□□ 0.38
LSM3P62310 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
LSM3P62310 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
LSM3P62310 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
LSM3P62310 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC17.42■□□□□ 0.38
LSM3P62310 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
LSM3P62310 PTMA-205ENST00000410064 814 ntTSL 2 BASIC17.42■□□□□ 0.38
LSM3P62310 FAM21FP-204ENST00000608637 956 ntBASIC17.42■□□□□ 0.38
LSM3P62310 SF1-220ENST00000626028 704 ntTSL 2 BASIC17.42■□□□□ 0.38
LSM3P62310 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC17.42■□□□□ 0.38
LSM3P62310 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC17.42■□□□□ 0.38
LSM3P62310 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
LSM3P62310 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
LSM3P62310 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
LSM3P62310 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC17.42■□□□□ 0.38
LSM3P62310 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
LSM3P62310 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
LSM3P62310 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
LSM3P62310 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
LSM3P62310 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
LSM3P62310 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC17.41■□□□□ 0.38
LSM3P62310 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
LSM3P62310 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
LSM3P62310 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC17.41■□□□□ 0.38
LSM3P62310 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
LSM3P62310 AP001271.2-201ENST00000624018 1556 ntBASIC17.41■□□□□ 0.38
LSM3P62310 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
LSM3P62310 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
LSM3P62310 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC17.41■□□□□ 0.38
LSM3P62310 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
LSM3P62310 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC17.41■□□□□ 0.38
LSM3P62310 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
LSM3P62310 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
LSM3P62310 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
LSM3P62310 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC17.41■□□□□ 0.38
LSM3P62310 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
LSM3P62310 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
LSM3P62310 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
LSM3P62310 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
LSM3P62310 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
LSM3P62310 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC17.41■□□□□ 0.38
LSM3P62310 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
LSM3P62310 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC17.4■□□□□ 0.38
LSM3P62310 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC17.4■□□□□ 0.38
LSM3P62310 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC17.4■□□□□ 0.38
LSM3P62310 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LSM3P62310 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC17.4■□□□□ 0.38
LSM3P62310 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
LSM3P62310 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
LSM3P62310 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC17.4■□□□□ 0.38
LSM3P62310 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
LSM3P62310 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LSM3P62310 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LSM3P62310 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
LSM3P62310 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
LSM3P62310 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
LSM3P62310 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LSM3P62310 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LSM3P62310 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LSM3P62310 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LSM3P62310 MFF-208ENST00000409616 1247 ntTSL 5 BASIC17.4■□□□□ 0.38
LSM3P62310 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC17.4■□□□□ 0.38
LSM3P62310 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LSM3P62310 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
LSM3P62310 TRIR-202ENST00000588213 841 ntTSL 3 BASIC17.4■□□□□ 0.38
LSM3P62310 AC120498.10-201ENST00000621827 505 ntBASIC17.4■□□□□ 0.38
LSM3P62310 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
LSM3P62310 USP39-202ENST00000409025 1946 ntTSL 5 BASIC17.4■□□□□ 0.38
LSM3P62310 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LSM3P62310 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC17.4■□□□□ 0.38
LSM3P62310 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
LSM3P62310 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LSM3P62310 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC17.4■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms