Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC18.96■□□□□ 0.63
PKNOX1P55347 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
PKNOX1P55347 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC18.96■□□□□ 0.63
PKNOX1P55347 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
PKNOX1P55347 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
PKNOX1P55347 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
PKNOX1P55347 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC18.96■□□□□ 0.63
PKNOX1P55347 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC18.96■□□□□ 0.63
PKNOX1P55347 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
PKNOX1P55347 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
PKNOX1P55347 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC18.96■□□□□ 0.63
PKNOX1P55347 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
PKNOX1P55347 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
PKNOX1P55347 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
PKNOX1P55347 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
PKNOX1P55347 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
PKNOX1P55347 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
PKNOX1P55347 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
PKNOX1P55347 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
PKNOX1P55347 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
PKNOX1P55347 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
PKNOX1P55347 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC18.95■□□□□ 0.62
PKNOX1P55347 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC18.95■□□□□ 0.62
PKNOX1P55347 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC18.95■□□□□ 0.62
PKNOX1P55347 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC18.95■□□□□ 0.62
PKNOX1P55347 AL121832.2-201ENST00000610979 668 ntBASIC18.95■□□□□ 0.62
PKNOX1P55347 AC092118.2-201ENST00000613495 667 ntBASIC18.95■□□□□ 0.62
PKNOX1P55347 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
PKNOX1P55347 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
PKNOX1P55347 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
PKNOX1P55347 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
PKNOX1P55347 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
PKNOX1P55347 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
PKNOX1P55347 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
PKNOX1P55347 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
PKNOX1P55347 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC18.94■□□□□ 0.62
PKNOX1P55347 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
PKNOX1P55347 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
PKNOX1P55347 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC18.94■□□□□ 0.62
PKNOX1P55347 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC18.94■□□□□ 0.62
PKNOX1P55347 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC18.94■□□□□ 0.62
PKNOX1P55347 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC18.94■□□□□ 0.62
PKNOX1P55347 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC18.94■□□□□ 0.62
PKNOX1P55347 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
PKNOX1P55347 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
PKNOX1P55347 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC18.94■□□□□ 0.62
PKNOX1P55347 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC18.94■□□□□ 0.62
PKNOX1P55347 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
PKNOX1P55347 DUSP5P2-201ENST00000426873 1033 ntBASIC18.94■□□□□ 0.62
PKNOX1P55347 DLX3-202ENST00000512495 834 ntTSL 2 BASIC18.94■□□□□ 0.62
PKNOX1P55347 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC18.94■□□□□ 0.62
PKNOX1P55347 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC18.94■□□□□ 0.62
PKNOX1P55347 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC18.94■□□□□ 0.62
PKNOX1P55347 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC18.94■□□□□ 0.62
PKNOX1P55347 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
PKNOX1P55347 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC18.94■□□□□ 0.62
PKNOX1P55347 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
PKNOX1P55347 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
PKNOX1P55347 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC18.93■□□□□ 0.62
PKNOX1P55347 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PKNOX1P55347 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
PKNOX1P55347 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC18.93■□□□□ 0.62
PKNOX1P55347 AL138781.2-201ENST00000617896 1843 ntBASIC18.93■□□□□ 0.62
PKNOX1P55347 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PKNOX1P55347 AR-207ENST00000612010 3896 ntTSL 5 BASIC18.93■□□□□ 0.62
PKNOX1P55347 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PKNOX1P55347 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC18.93■□□□□ 0.62
PKNOX1P55347 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PKNOX1P55347 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
PKNOX1P55347 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC18.93■□□□□ 0.62
PKNOX1P55347 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
PKNOX1P55347 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
PKNOX1P55347 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PKNOX1P55347 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PKNOX1P55347 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PKNOX1P55347 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC18.93■□□□□ 0.62
PKNOX1P55347 AC083906.2-201ENST00000511578 360 ntBASIC18.93■□□□□ 0.62
PKNOX1P55347 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC18.93■□□□□ 0.62
PKNOX1P55347 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC18.93■□□□□ 0.62
PKNOX1P55347 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC18.93■□□□□ 0.62
PKNOX1P55347 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC18.93■□□□□ 0.62
PKNOX1P55347 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
PKNOX1P55347 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PKNOX1P55347 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PKNOX1P55347 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC18.93■□□□□ 0.62
PKNOX1P55347 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
PKNOX1P55347 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
PKNOX1P55347 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
PKNOX1P55347 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
PKNOX1P55347 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC18.92■□□□□ 0.62
PKNOX1P55347 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
PKNOX1P55347 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PKNOX1P55347 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PKNOX1P55347 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC18.92■□□□□ 0.62
PKNOX1P55347 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
PKNOX1P55347 MAX-217ENST00000557277 728 ntTSL 3 BASIC18.92■□□□□ 0.62
PKNOX1P55347 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC18.92■□□□□ 0.62
PKNOX1P55347 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
PKNOX1P55347 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC18.92■□□□□ 0.62
PKNOX1P55347 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 45.2 ms