Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
LIMK1P53667 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
LIMK1P53667 KRT17P6-201ENST00000453795 1220 ntBASIC19.13■□□□□ 0.65
LIMK1P53667 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC19.13■□□□□ 0.65
LIMK1P53667 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
LIMK1P53667 RN7SL510P-201ENST00000581311 263 ntBASIC19.13■□□□□ 0.65
LIMK1P53667 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC19.13■□□□□ 0.65
LIMK1P53667 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC19.13■□□□□ 0.65
LIMK1P53667 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC19.13■□□□□ 0.65
LIMK1P53667 CR769767.2-201ENST00000622735 460 ntBASIC19.13■□□□□ 0.65
LIMK1P53667 AL023973.1-201ENST00000624619 620 ntBASIC19.13■□□□□ 0.65
LIMK1P53667 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
LIMK1P53667 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
LIMK1P53667 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
LIMK1P53667 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC19.13■□□□□ 0.65
LIMK1P53667 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
LIMK1P53667 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC19.13■□□□□ 0.65
LIMK1P53667 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC19.12■□□□□ 0.65
LIMK1P53667 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
LIMK1P53667 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
LIMK1P53667 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
LIMK1P53667 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
LIMK1P53667 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
LIMK1P53667 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
LIMK1P53667 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC19.12■□□□□ 0.65
LIMK1P53667 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC19.12■□□□□ 0.65
LIMK1P53667 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
LIMK1P53667 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC19.12■□□□□ 0.65
LIMK1P53667 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
LIMK1P53667 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
LIMK1P53667 KRT18P38-201ENST00000449496 1282 ntBASIC19.12■□□□□ 0.65
LIMK1P53667 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC19.12■□□□□ 0.65
LIMK1P53667 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
LIMK1P53667 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC19.12■□□□□ 0.65
LIMK1P53667 ZNF444P1-201ENST00000559497 298 ntBASIC19.12■□□□□ 0.65
LIMK1P53667 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC19.12■□□□□ 0.65
LIMK1P53667 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
LIMK1P53667 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC19.12■□□□□ 0.65
LIMK1P53667 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC19.11■□□□□ 0.65
LIMK1P53667 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC19.11■□□□□ 0.65
LIMK1P53667 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC19.11■□□□□ 0.65
LIMK1P53667 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
LIMK1P53667 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
LIMK1P53667 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
LIMK1P53667 AC004870.1-201ENST00000315132 882 ntBASIC19.11■□□□□ 0.65
LIMK1P53667 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
LIMK1P53667 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
LIMK1P53667 FXN-203ENST00000396366 922 ntTSL 2 BASIC19.11■□□□□ 0.65
LIMK1P53667 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC19.11■□□□□ 0.65
LIMK1P53667 TSPY21P-201ENST00000433481 731 ntBASIC19.11■□□□□ 0.65
LIMK1P53667 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
LIMK1P53667 TSPY23P-201ENST00000440136 739 ntBASIC19.11■□□□□ 0.65
LIMK1P53667 CA15P1-201ENST00000481698 905 ntBASIC19.11■□□□□ 0.65
LIMK1P53667 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC19.11■□□□□ 0.65
LIMK1P53667 LY6E-213ENST00000522528 606 ntTSL 3 BASIC19.11■□□□□ 0.65
LIMK1P53667 SDHD-206ENST00000528182 754 ntTSL 3 BASIC19.11■□□□□ 0.65
LIMK1P53667 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC19.11■□□□□ 0.65
LIMK1P53667 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC19.11■□□□□ 0.65
LIMK1P53667 ETFA-216ENST00000560726 942 ntTSL 3 BASIC19.11■□□□□ 0.65
LIMK1P53667 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC19.11■□□□□ 0.65
LIMK1P53667 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC19.11■□□□□ 0.65
LIMK1P53667 AC023511.2-201ENST00000618803 211 ntBASIC19.11■□□□□ 0.65
LIMK1P53667 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
LIMK1P53667 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
LIMK1P53667 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
LIMK1P53667 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
LIMK1P53667 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
LIMK1P53667 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
LIMK1P53667 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC19.1■□□□□ 0.65
LIMK1P53667 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
LIMK1P53667 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
LIMK1P53667 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
LIMK1P53667 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC19.1■□□□□ 0.65
LIMK1P53667 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
LIMK1P53667 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
LIMK1P53667 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC19.1■□□□□ 0.65
LIMK1P53667 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
LIMK1P53667 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
LIMK1P53667 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
LIMK1P53667 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
LIMK1P53667 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
LIMK1P53667 AP000523.1-201ENST00000398242 1049 ntBASIC19.1■□□□□ 0.65
LIMK1P53667 AP000347.1-202ENST00000435868 847 ntBASIC19.1■□□□□ 0.65
LIMK1P53667 FAAHP1-202ENST00000446499 1238 ntBASIC19.1■□□□□ 0.65
LIMK1P53667 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC19.1■□□□□ 0.65
LIMK1P53667 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
LIMK1P53667 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC19.1■□□□□ 0.65
LIMK1P53667 AC111152.3-201ENST00000569699 673 ntBASIC19.1■□□□□ 0.65
LIMK1P53667 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC19.1■□□□□ 0.65
LIMK1P53667 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
LIMK1P53667 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC19.1■□□□□ 0.65
LIMK1P53667 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
LIMK1P53667 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC19.1■□□□□ 0.65
LIMK1P53667 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
LIMK1P53667 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
LIMK1P53667 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
LIMK1P53667 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
LIMK1P53667 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
LIMK1P53667 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
LIMK1P53667 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC19.1■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms