Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC26.86■■□□□ 1.89
MSH6P52701 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
MSH6P52701 AL024507.2-201ENST00000606070 2574 ntBASIC26.86■■□□□ 1.89
MSH6P52701 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC26.86■■□□□ 1.89
MSH6P52701 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
MSH6P52701 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
MSH6P52701 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC26.86■■□□□ 1.89
MSH6P52701 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC26.86■■□□□ 1.89
MSH6P52701 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC26.86■■□□□ 1.89
MSH6P52701 CHCHD2P8-201ENST00000429873 447 ntBASIC26.86■■□□□ 1.89
MSH6P52701 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC26.86■■□□□ 1.89
MSH6P52701 IL11-204ENST00000590625 1028 ntTSL 2 BASIC26.86■■□□□ 1.89
MSH6P52701 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC26.86■■□□□ 1.89
MSH6P52701 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC26.86■■□□□ 1.89
MSH6P52701 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC26.86■■□□□ 1.89
MSH6P52701 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
MSH6P52701 FBXW4P1-201ENST00000426721 2239 ntBASIC26.85■■□□□ 1.89
MSH6P52701 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC26.85■■□□□ 1.89
MSH6P52701 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
MSH6P52701 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC26.85■■□□□ 1.89
MSH6P52701 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC26.85■■□□□ 1.89
MSH6P52701 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC26.85■■□□□ 1.89
MSH6P52701 AL662844.1-201ENST00000546340 181 ntBASIC26.85■■□□□ 1.89
MSH6P52701 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC26.85■■□□□ 1.89
MSH6P52701 AL121772.3-201ENST00000610840 674 ntBASIC26.85■■□□□ 1.89
MSH6P52701 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC26.85■■□□□ 1.89
MSH6P52701 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
MSH6P52701 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
MSH6P52701 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
MSH6P52701 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC26.85■■□□□ 1.89
MSH6P52701 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC26.85■■□□□ 1.89
MSH6P52701 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
MSH6P52701 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC26.85■■□□□ 1.89
MSH6P52701 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC26.85■■□□□ 1.89
MSH6P52701 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC26.84■■□□□ 1.89
MSH6P52701 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
MSH6P52701 AC079776.4-201ENST00000511039 504 ntBASIC26.84■■□□□ 1.89
MSH6P52701 AC091304.2-201ENST00000564639 760 ntBASIC26.84■■□□□ 1.89
MSH6P52701 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC26.84■■□□□ 1.89
MSH6P52701 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
MSH6P52701 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC26.84■■□□□ 1.89
MSH6P52701 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC26.84■■□□□ 1.89
MSH6P52701 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC26.84■■□□□ 1.89
MSH6P52701 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC26.84■■□□□ 1.89
MSH6P52701 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC26.84■■□□□ 1.89
MSH6P52701 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC26.84■■□□□ 1.89
MSH6P52701 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC26.84■■□□□ 1.89
MSH6P52701 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC26.84■■□□□ 1.89
MSH6P52701 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC26.84■■□□□ 1.89
MSH6P52701 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC26.84■■□□□ 1.89
MSH6P52701 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC26.84■■□□□ 1.89
MSH6P52701 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC26.84■■□□□ 1.89
MSH6P52701 WDR6-223ENST00000627177 207 ntTSL 2 BASIC26.84■■□□□ 1.89
MSH6P52701 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC26.83■■□□□ 1.89
MSH6P52701 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
MSH6P52701 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
MSH6P52701 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC26.83■■□□□ 1.89
MSH6P52701 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
MSH6P52701 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
MSH6P52701 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC26.83■■□□□ 1.89
MSH6P52701 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC26.83■■□□□ 1.89
MSH6P52701 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC26.83■■□□□ 1.89
MSH6P52701 AC093525.10-201ENST00000625130 1569 ntBASIC26.83■■□□□ 1.89
MSH6P52701 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC26.83■■□□□ 1.89
MSH6P52701 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
MSH6P52701 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.88
MSH6P52701 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.88
MSH6P52701 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC26.83■■□□□ 1.88
MSH6P52701 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC26.83■■□□□ 1.88
MSH6P52701 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC26.83■■□□□ 1.88
MSH6P52701 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC26.83■■□□□ 1.88
MSH6P52701 MPI-205ENST00000562606 1052 ntTSL 3 BASIC26.83■■□□□ 1.88
MSH6P52701 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
MSH6P52701 KRT8P11-201ENST00000409686 1436 ntBASIC26.82■■□□□ 1.88
MSH6P52701 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC26.82■■□□□ 1.88
MSH6P52701 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC26.82■■□□□ 1.88
MSH6P52701 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC26.82■■□□□ 1.88
MSH6P52701 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC26.82■■□□□ 1.88
MSH6P52701 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC26.82■■□□□ 1.88
MSH6P52701 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
MSH6P52701 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC26.82■■□□□ 1.88
MSH6P52701 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC26.82■■□□□ 1.88
MSH6P52701 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC26.82■■□□□ 1.88
MSH6P52701 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
MSH6P52701 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC26.82■■□□□ 1.88
MSH6P52701 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
MSH6P52701 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC26.82■■□□□ 1.88
MSH6P52701 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC26.82■■□□□ 1.88
MSH6P52701 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC26.82■■□□□ 1.88
MSH6P52701 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC26.82■■□□□ 1.88
MSH6P52701 AC120114.3-201ENST00000611923 658 ntBASIC26.82■■□□□ 1.88
MSH6P52701 AC117500.6-201ENST00000624871 588 ntBASIC26.82■■□□□ 1.88
MSH6P52701 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC26.82■■□□□ 1.88
MSH6P52701 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC26.81■■□□□ 1.88
MSH6P52701 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC26.81■■□□□ 1.88
MSH6P52701 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC26.81■■□□□ 1.88
MSH6P52701 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC26.81■■□□□ 1.88
MSH6P52701 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC26.81■■□□□ 1.88
MSH6P52701 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
MSH6P52701 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC26.81■■□□□ 1.88
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms