Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CLDN9O95484 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
CLDN9O95484 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CLDN9O95484 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC18.71■□□□□ 0.59
CLDN9O95484 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CLDN9O95484 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC18.71■□□□□ 0.59
CLDN9O95484 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CLDN9O95484 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CLDN9O95484 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CLDN9O95484 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
CLDN9O95484 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC18.71■□□□□ 0.58
CLDN9O95484 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC18.7■□□□□ 0.58
CLDN9O95484 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLDN9O95484 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
CLDN9O95484 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC18.7■□□□□ 0.58
CLDN9O95484 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLDN9O95484 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CLDN9O95484 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC18.7■□□□□ 0.58
CLDN9O95484 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CLDN9O95484 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLDN9O95484 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLDN9O95484 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLDN9O95484 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CLDN9O95484 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLDN9O95484 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLDN9O95484 GAS7-202ENST00000396115 929 ntTSL 5 BASIC18.7■□□□□ 0.58
CLDN9O95484 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CLDN9O95484 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC18.7■□□□□ 0.58
CLDN9O95484 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC18.7■□□□□ 0.58
CLDN9O95484 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC18.7■□□□□ 0.58
CLDN9O95484 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
CLDN9O95484 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CLDN9O95484 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLDN9O95484 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLDN9O95484 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC18.7■□□□□ 0.58
CLDN9O95484 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC18.7■□□□□ 0.58
CLDN9O95484 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC18.7■□□□□ 0.58
CLDN9O95484 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC18.7■□□□□ 0.58
CLDN9O95484 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC18.7■□□□□ 0.58
CLDN9O95484 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLDN9O95484 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLDN9O95484 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CLDN9O95484 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC18.7■□□□□ 0.58
CLDN9O95484 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC18.7■□□□□ 0.58
CLDN9O95484 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CLDN9O95484 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC18.7■□□□□ 0.58
CLDN9O95484 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLDN9O95484 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
CLDN9O95484 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CLDN9O95484 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC18.69■□□□□ 0.58
CLDN9O95484 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLDN9O95484 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CLDN9O95484 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLDN9O95484 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLDN9O95484 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLDN9O95484 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLDN9O95484 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC18.69■□□□□ 0.58
CLDN9O95484 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CLDN9O95484 AC008403.3-201ENST00000598924 454 ntBASIC18.69■□□□□ 0.58
CLDN9O95484 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC18.69■□□□□ 0.58
CLDN9O95484 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC18.69■□□□□ 0.58
CLDN9O95484 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CLDN9O95484 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CLDN9O95484 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
CLDN9O95484 SDHAP1-207ENST00000440850 2000 ntBASIC18.69■□□□□ 0.58
CLDN9O95484 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CLDN9O95484 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLDN9O95484 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLDN9O95484 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC18.68■□□□□ 0.58
CLDN9O95484 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLDN9O95484 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
CLDN9O95484 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
CLDN9O95484 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CLDN9O95484 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC18.68■□□□□ 0.58
CLDN9O95484 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLDN9O95484 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLDN9O95484 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CLDN9O95484 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLDN9O95484 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLDN9O95484 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CLDN9O95484 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CLDN9O95484 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC18.68■□□□□ 0.58
CLDN9O95484 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC18.68■□□□□ 0.58
CLDN9O95484 RNA5SP413-201ENST00000516373 109 ntBASIC18.68■□□□□ 0.58
CLDN9O95484 RHOD-202ENST00000532559 538 ntTSL 3 BASIC18.68■□□□□ 0.58
CLDN9O95484 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CLDN9O95484 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC18.68■□□□□ 0.58
CLDN9O95484 EMC9-206ENST00000560403 872 ntTSL 2 BASIC18.68■□□□□ 0.58
CLDN9O95484 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CLDN9O95484 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CLDN9O95484 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLDN9O95484 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC18.68■□□□□ 0.58
CLDN9O95484 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLDN9O95484 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLDN9O95484 AL161938.1-201ENST00000569833 2180 ntBASIC18.68■□□□□ 0.58
CLDN9O95484 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
CLDN9O95484 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CLDN9O95484 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLDN9O95484 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC18.67■□□□□ 0.58
CLDN9O95484 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 15.6 ms