Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
LDB3O75112 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
LDB3O75112 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
LDB3O75112 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
LDB3O75112 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
LDB3O75112 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
LDB3O75112 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
LDB3O75112 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC18.22■□□□□ 0.51
LDB3O75112 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC18.22■□□□□ 0.51
LDB3O75112 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC18.22■□□□□ 0.51
LDB3O75112 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC18.22■□□□□ 0.51
LDB3O75112 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
LDB3O75112 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
LDB3O75112 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC18.22■□□□□ 0.51
LDB3O75112 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC18.22■□□□□ 0.51
LDB3O75112 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC18.22■□□□□ 0.51
LDB3O75112 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC18.22■□□□□ 0.51
LDB3O75112 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
LDB3O75112 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC18.22■□□□□ 0.51
LDB3O75112 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
LDB3O75112 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC18.22■□□□□ 0.51
LDB3O75112 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC18.22■□□□□ 0.51
LDB3O75112 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
LDB3O75112 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LDB3O75112 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
LDB3O75112 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
LDB3O75112 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC18.21■□□□□ 0.51
LDB3O75112 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LDB3O75112 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC18.21■□□□□ 0.51
LDB3O75112 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LDB3O75112 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
LDB3O75112 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
LDB3O75112 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC18.21■□□□□ 0.51
LDB3O75112 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC18.21■□□□□ 0.51
LDB3O75112 NIFKP9-201ENST00000419265 221 ntBASIC18.21■□□□□ 0.51
LDB3O75112 AL353807.1-201ENST00000427475 662 ntBASIC18.21■□□□□ 0.51
LDB3O75112 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
LDB3O75112 RPS2P4-201ENST00000476944 856 ntBASIC18.21■□□□□ 0.51
LDB3O75112 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
LDB3O75112 AC008550.1-201ENST00000511500 884 ntBASIC18.21■□□□□ 0.51
LDB3O75112 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
LDB3O75112 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC18.21■□□□□ 0.51
LDB3O75112 REXO2-216ENST00000544196 452 ntTSL 3 BASIC18.21■□□□□ 0.51
LDB3O75112 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC18.21■□□□□ 0.51
LDB3O75112 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC18.21■□□□□ 0.51
LDB3O75112 DET1-205ENST00000558413 583 ntTSL 4 BASIC18.21■□□□□ 0.51
LDB3O75112 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC18.21■□□□□ 0.51
LDB3O75112 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC18.21■□□□□ 0.51
LDB3O75112 Z99916.2-201ENST00000604037 246 ntBASIC18.21■□□□□ 0.51
LDB3O75112 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC18.21■□□□□ 0.51
LDB3O75112 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC18.21■□□□□ 0.51
LDB3O75112 AP006294.2-201ENST00000641667 209 ntBASIC18.21■□□□□ 0.51
LDB3O75112 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LDB3O75112 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC18.21■□□□□ 0.51
LDB3O75112 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LDB3O75112 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LDB3O75112 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
LDB3O75112 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LDB3O75112 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC18.21■□□□□ 0.51
LDB3O75112 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC18.21■□□□□ 0.5
LDB3O75112 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LDB3O75112 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
LDB3O75112 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LDB3O75112 AC104417.2-201ENST00000562989 1793 ntBASIC18.2■□□□□ 0.5
LDB3O75112 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
LDB3O75112 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC18.2■□□□□ 0.5
LDB3O75112 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC18.2■□□□□ 0.5
LDB3O75112 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LDB3O75112 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
LDB3O75112 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
LDB3O75112 RPS2P55-201ENST00000397318 883 ntBASIC18.2■□□□□ 0.5
LDB3O75112 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
LDB3O75112 AC107956.1-201ENST00000494359 873 ntBASIC18.2■□□□□ 0.5
LDB3O75112 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC18.2■□□□□ 0.5
LDB3O75112 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC18.2■□□□□ 0.5
LDB3O75112 RPS15-203ENST00000586096 570 ntTSL 2 BASIC18.2■□□□□ 0.5
LDB3O75112 AL353708.3-201ENST00000610272 989 ntBASIC18.2■□□□□ 0.5
LDB3O75112 AL135905.2-201ENST00000584934 1404 ntBASIC18.2■□□□□ 0.5
LDB3O75112 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
LDB3O75112 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC18.2■□□□□ 0.5
LDB3O75112 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
LDB3O75112 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LDB3O75112 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
LDB3O75112 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LDB3O75112 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
LDB3O75112 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
LDB3O75112 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LDB3O75112 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LDB3O75112 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LDB3O75112 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
LDB3O75112 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
LDB3O75112 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LDB3O75112 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LDB3O75112 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC18.19■□□□□ 0.5
LDB3O75112 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
LDB3O75112 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
LDB3O75112 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LDB3O75112 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
LDB3O75112 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC18.19■□□□□ 0.5
LDB3O75112 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms