Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC19.4■□□□□ 0.7
SHOX2O60902 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC19.4■□□□□ 0.7
SHOX2O60902 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SHOX2O60902 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC19.39■□□□□ 0.7
SHOX2O60902 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
SHOX2O60902 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.7
SHOX2O60902 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC19.39■□□□□ 0.69
SHOX2O60902 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SHOX2O60902 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC19.39■□□□□ 0.69
SHOX2O60902 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SHOX2O60902 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC19.39■□□□□ 0.69
SHOX2O60902 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC19.39■□□□□ 0.69
SHOX2O60902 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC19.39■□□□□ 0.69
SHOX2O60902 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SHOX2O60902 AC091799.1-201ENST00000422823 811 ntBASIC19.39■□□□□ 0.69
SHOX2O60902 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC19.39■□□□□ 0.69
SHOX2O60902 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SHOX2O60902 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SHOX2O60902 AC126544.1-201ENST00000580842 1059 ntBASIC19.39■□□□□ 0.69
SHOX2O60902 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC19.39■□□□□ 0.69
SHOX2O60902 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC19.39■□□□□ 0.69
SHOX2O60902 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC19.39■□□□□ 0.69
SHOX2O60902 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SHOX2O60902 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC19.39■□□□□ 0.69
SHOX2O60902 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SHOX2O60902 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC19.39■□□□□ 0.69
SHOX2O60902 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC19.39■□□□□ 0.69
SHOX2O60902 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
SHOX2O60902 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
SHOX2O60902 AC012317.2-201ENST00000623305 2251 ntBASIC19.39■□□□□ 0.69
SHOX2O60902 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SHOX2O60902 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC19.39■□□□□ 0.69
SHOX2O60902 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC19.39■□□□□ 0.69
SHOX2O60902 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SHOX2O60902 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC19.38■□□□□ 0.69
SHOX2O60902 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SHOX2O60902 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
SHOX2O60902 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SHOX2O60902 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SHOX2O60902 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SHOX2O60902 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
SHOX2O60902 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SHOX2O60902 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SHOX2O60902 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SHOX2O60902 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SHOX2O60902 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SHOX2O60902 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SHOX2O60902 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SHOX2O60902 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SHOX2O60902 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SHOX2O60902 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SHOX2O60902 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
SHOX2O60902 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC19.38■□□□□ 0.69
SHOX2O60902 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SHOX2O60902 AC024257.2-201ENST00000549699 147 ntBASIC19.38■□□□□ 0.69
SHOX2O60902 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
SHOX2O60902 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC19.38■□□□□ 0.69
SHOX2O60902 AL645608.8-201ENST00000606034 2086 ntBASIC19.38■□□□□ 0.69
SHOX2O60902 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC19.38■□□□□ 0.69
SHOX2O60902 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC19.38■□□□□ 0.69
SHOX2O60902 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SHOX2O60902 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SHOX2O60902 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SHOX2O60902 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SHOX2O60902 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
SHOX2O60902 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SHOX2O60902 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SHOX2O60902 AC020763.4-201ENST00000623414 4170 ntBASIC19.37■□□□□ 0.69
SHOX2O60902 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC19.37■□□□□ 0.69
SHOX2O60902 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC19.37■□□□□ 0.69
SHOX2O60902 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SHOX2O60902 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SHOX2O60902 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC19.37■□□□□ 0.69
SHOX2O60902 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SHOX2O60902 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SHOX2O60902 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
SHOX2O60902 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC19.37■□□□□ 0.69
SHOX2O60902 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
SHOX2O60902 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
SHOX2O60902 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC19.37■□□□□ 0.69
SHOX2O60902 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SHOX2O60902 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC19.37■□□□□ 0.69
SHOX2O60902 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC19.37■□□□□ 0.69
SHOX2O60902 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SHOX2O60902 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SHOX2O60902 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC19.37■□□□□ 0.69
SHOX2O60902 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC19.37■□□□□ 0.69
SHOX2O60902 AL031963.3-201ENST00000606441 850 ntBASIC19.37■□□□□ 0.69
SHOX2O60902 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SHOX2O60902 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SHOX2O60902 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SHOX2O60902 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SHOX2O60902 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC19.37■□□□□ 0.69
SHOX2O60902 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
SHOX2O60902 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SHOX2O60902 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
SHOX2O60902 AC080080.1-201ENST00000625121 2420 ntBASIC19.36■□□□□ 0.69
SHOX2O60902 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SHOX2O60902 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC19.36■□□□□ 0.69
SHOX2O60902 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms