Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC17■□□□□ 0.31
LMX1BO60663 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC17■□□□□ 0.31
LMX1BO60663 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
LMX1BO60663 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC17■□□□□ 0.31
LMX1BO60663 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
LMX1BO60663 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
LMX1BO60663 GXYLT1P3-201ENST00000453058 1193 ntBASIC17■□□□□ 0.31
LMX1BO60663 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC17■□□□□ 0.31
LMX1BO60663 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC17■□□□□ 0.31
LMX1BO60663 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC17■□□□□ 0.31
LMX1BO60663 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC17■□□□□ 0.31
LMX1BO60663 Z99916.2-201ENST00000604037 246 ntBASIC17■□□□□ 0.31
LMX1BO60663 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
LMX1BO60663 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
LMX1BO60663 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
LMX1BO60663 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC17■□□□□ 0.31
LMX1BO60663 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
LMX1BO60663 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC17■□□□□ 0.31
LMX1BO60663 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC16.99■□□□□ 0.31
LMX1BO60663 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
LMX1BO60663 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
LMX1BO60663 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC16.99■□□□□ 0.31
LMX1BO60663 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
LMX1BO60663 ECEL1P3-201ENST00000427961 737 ntBASIC16.99■□□□□ 0.31
LMX1BO60663 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
LMX1BO60663 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
LMX1BO60663 SNORA78-201ENST00000459373 127 ntBASIC16.99■□□□□ 0.31
LMX1BO60663 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
LMX1BO60663 SOX15-203ENST00000570788 1093 ntBASIC16.99■□□□□ 0.31
LMX1BO60663 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC16.99■□□□□ 0.31
LMX1BO60663 REXO1L12P-201ENST00000622156 912 ntBASIC16.99■□□□□ 0.31
LMX1BO60663 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC16.99■□□□□ 0.31
LMX1BO60663 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
LMX1BO60663 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
LMX1BO60663 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
LMX1BO60663 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC16.98■□□□□ 0.31
LMX1BO60663 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC16.98■□□□□ 0.31
LMX1BO60663 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC16.98■□□□□ 0.31
LMX1BO60663 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
LMX1BO60663 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
LMX1BO60663 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
LMX1BO60663 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
LMX1BO60663 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
LMX1BO60663 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC16.98■□□□□ 0.31
LMX1BO60663 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
LMX1BO60663 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
LMX1BO60663 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
LMX1BO60663 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC16.98■□□□□ 0.31
LMX1BO60663 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC16.98■□□□□ 0.31
LMX1BO60663 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC16.98■□□□□ 0.31
LMX1BO60663 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC16.98■□□□□ 0.31
LMX1BO60663 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC16.98■□□□□ 0.31
LMX1BO60663 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC16.98■□□□□ 0.31
LMX1BO60663 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC16.98■□□□□ 0.31
LMX1BO60663 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
LMX1BO60663 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
LMX1BO60663 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
LMX1BO60663 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC16.98■□□□□ 0.31
LMX1BO60663 CRK-204ENST00000574295 1391 ntTSL 5 BASIC16.98■□□□□ 0.31
LMX1BO60663 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC16.98■□□□□ 0.31
LMX1BO60663 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
LMX1BO60663 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC16.98■□□□□ 0.31
LMX1BO60663 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
LMX1BO60663 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC16.98■□□□□ 0.31
LMX1BO60663 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
LMX1BO60663 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
LMX1BO60663 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
LMX1BO60663 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
LMX1BO60663 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC16.97■□□□□ 0.31
LMX1BO60663 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
LMX1BO60663 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
LMX1BO60663 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
LMX1BO60663 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
LMX1BO60663 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
LMX1BO60663 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
LMX1BO60663 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC16.97■□□□□ 0.31
LMX1BO60663 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
LMX1BO60663 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC16.97■□□□□ 0.31
LMX1BO60663 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
LMX1BO60663 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
LMX1BO60663 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
LMX1BO60663 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
LMX1BO60663 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
LMX1BO60663 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC16.97■□□□□ 0.31
LMX1BO60663 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
LMX1BO60663 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
LMX1BO60663 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC16.97■□□□□ 0.31
LMX1BO60663 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
LMX1BO60663 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
LMX1BO60663 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC16.97■□□□□ 0.31
LMX1BO60663 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC16.97■□□□□ 0.31
LMX1BO60663 AC069544.1-201ENST00000609399 999 ntBASIC16.97■□□□□ 0.31
LMX1BO60663 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
LMX1BO60663 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
LMX1BO60663 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
LMX1BO60663 AC116351.2-201ENST00000606540 1585 ntBASIC16.97■□□□□ 0.31
LMX1BO60663 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
LMX1BO60663 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC16.97■□□□□ 0.31
LMX1BO60663 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
LMX1BO60663 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms