Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 AC026471.6-201ENST00000622954 1905 ntBASIC26.12■■□□□ 1.77
MSH5O43196 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
MSH5O43196 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC26.12■■□□□ 1.77
MSH5O43196 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC26.12■■□□□ 1.77
MSH5O43196 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
MSH5O43196 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
MSH5O43196 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC26.12■■□□□ 1.77
MSH5O43196 STATH-201ENST00000246895 598 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
MSH5O43196 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC26.12■■□□□ 1.77
MSH5O43196 AL050338.2-202ENST00000431609 956 ntTSL 2 BASIC26.12■■□□□ 1.77
MSH5O43196 AL035706.1-201ENST00000439186 683 ntTSL 3 BASIC26.12■■□□□ 1.77
MSH5O43196 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC26.12■■□□□ 1.77
MSH5O43196 AL157762.1-201ENST00000619612 415 ntBASIC26.12■■□□□ 1.77
MSH5O43196 NRXN1-234ENST00000630656 837 ntTSL 5 BASIC26.12■■□□□ 1.77
MSH5O43196 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC26.12■■□□□ 1.77
MSH5O43196 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC26.12■■□□□ 1.77
MSH5O43196 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
MSH5O43196 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC26.12■■□□□ 1.77
MSH5O43196 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
MSH5O43196 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
MSH5O43196 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
MSH5O43196 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC26.12■■□□□ 1.77
MSH5O43196 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC26.12■■□□□ 1.77
MSH5O43196 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC26.11■■□□□ 1.77
MSH5O43196 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
MSH5O43196 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC26.11■■□□□ 1.77
MSH5O43196 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC26.11■■□□□ 1.77
MSH5O43196 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
MSH5O43196 TNXA-203ENST00000507684 2038 ntBASIC26.11■■□□□ 1.77
MSH5O43196 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
MSH5O43196 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC26.11■■□□□ 1.77
MSH5O43196 AC091390.4-201ENST00000484974 491 ntTSL 3 BASIC26.11■■□□□ 1.77
MSH5O43196 AC093801.2-201ENST00000503966 1050 ntBASIC26.11■■□□□ 1.77
MSH5O43196 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC26.11■■□□□ 1.77
MSH5O43196 AC079296.1-202ENST00000521394 960 ntTSL 4 BASIC26.11■■□□□ 1.77
MSH5O43196 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC26.11■■□□□ 1.77
MSH5O43196 GRAP-204ENST00000573099 846 ntTSL 3 BASIC26.11■■□□□ 1.77
MSH5O43196 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC26.11■■□□□ 1.77
MSH5O43196 PSMG2-210ENST00000590217 1036 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
MSH5O43196 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC26.11■■□□□ 1.77
MSH5O43196 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
MSH5O43196 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
MSH5O43196 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC26.11■■□□□ 1.77
MSH5O43196 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC26.1■■□□□ 1.77
MSH5O43196 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC26.1■■□□□ 1.77
MSH5O43196 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
MSH5O43196 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC26.1■■□□□ 1.77
MSH5O43196 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC26.1■■□□□ 1.77
MSH5O43196 KRT18P57-201ENST00000443599 1254 ntBASIC26.1■■□□□ 1.77
MSH5O43196 LINC01445-202ENST00000458615 679 ntTSL 2 BASIC26.1■■□□□ 1.77
MSH5O43196 RPS15-203ENST00000586096 570 ntTSL 2 BASIC26.1■■□□□ 1.77
MSH5O43196 AC138907.10-201ENST00000623708 983 ntBASIC26.1■■□□□ 1.77
MSH5O43196 AC009039.2-201ENST00000624524 529 ntBASIC26.1■■□□□ 1.77
MSH5O43196 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
MSH5O43196 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC26.1■■□□□ 1.77
MSH5O43196 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
MSH5O43196 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
MSH5O43196 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
MSH5O43196 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC26.1■■□□□ 1.77
MSH5O43196 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC26.09■■□□□ 1.77
MSH5O43196 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
MSH5O43196 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC26.09■■□□□ 1.77
MSH5O43196 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
MSH5O43196 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC26.09■■□□□ 1.77
MSH5O43196 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
MSH5O43196 RER1-204ENST00000378518 522 ntTSL 3 BASIC26.09■■□□□ 1.77
MSH5O43196 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC26.09■■□□□ 1.77
MSH5O43196 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC26.09■■□□□ 1.77
MSH5O43196 MTCYBP28-201ENST00000566728 1132 ntBASIC26.09■■□□□ 1.77
MSH5O43196 BRWD1-AS2-201ENST00000603064 1028 ntBASIC26.09■■□□□ 1.77
MSH5O43196 LINC01125-249ENST00000627399 1067 ntAPPRIS P5 TSL 5 BASIC26.09■■□□□ 1.77
MSH5O43196 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
MSH5O43196 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC26.09■■□□□ 1.77
MSH5O43196 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
MSH5O43196 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
MSH5O43196 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC26.08■■□□□ 1.77
MSH5O43196 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
MSH5O43196 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
MSH5O43196 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
MSH5O43196 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
MSH5O43196 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC26.08■■□□□ 1.77
MSH5O43196 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
MSH5O43196 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
MSH5O43196 H3F3A-203ENST00000366815 1088 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
MSH5O43196 FAM197Y1-201ENST00000421178 764 ntBASIC26.08■■□□□ 1.77
MSH5O43196 MTND2P11-201ENST00000423638 648 ntBASIC26.08■■□□□ 1.77
MSH5O43196 MTND1P26-201ENST00000440488 538 ntBASIC26.08■■□□□ 1.77
MSH5O43196 AL162385.1-201ENST00000451595 1202 ntTSL 2 BASIC26.08■■□□□ 1.77
MSH5O43196 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC26.08■■□□□ 1.77
MSH5O43196 DUT-205ENST00000558813 769 ntTSL 2 BASIC26.08■■□□□ 1.77
MSH5O43196 AC090515.5-201ENST00000560378 526 ntTSL 5 BASIC26.08■■□□□ 1.77
MSH5O43196 AC079416.3-201ENST00000624479 549 ntBASIC26.08■■□□□ 1.77
MSH5O43196 AP000842.4-201ENST00000638781 748 ntBASIC26.08■■□□□ 1.77
MSH5O43196 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC26.08■■□□□ 1.77
MSH5O43196 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC26.08■■□□□ 1.77
MSH5O43196 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC26.08■■□□□ 1.77
MSH5O43196 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC26.08■■□□□ 1.77
MSH5O43196 HTR7P1-201ENST00000538670 1336 ntBASIC26.08■■□□□ 1.77
MSH5O43196 AC116050.2-201ENST00000612102 1779 ntBASIC26.07■■□□□ 1.76
MSH5O43196 AC005082.1-201ENST00000413042 2259 ntBASIC26.07■■□□□ 1.76
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms