Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC15.56■□□□□ 0.08
HMGB3O15347 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
HMGB3O15347 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
HMGB3O15347 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC15.56■□□□□ 0.08
HMGB3O15347 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
HMGB3O15347 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC15.56■□□□□ 0.08
HMGB3O15347 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC15.56■□□□□ 0.08
HMGB3O15347 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
HMGB3O15347 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
HMGB3O15347 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
HMGB3O15347 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC15.56■□□□□ 0.08
HMGB3O15347 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
HMGB3O15347 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
HMGB3O15347 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
HMGB3O15347 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
HMGB3O15347 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
HMGB3O15347 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
HMGB3O15347 UBR2-201ENST00000372899 7857 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
HMGB3O15347 UBR2-202ENST00000372901 7857 ntAPPRIS ALT1 TSL 5 BASIC15.55■□□□□ 0.08
HMGB3O15347 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
HMGB3O15347 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
HMGB3O15347 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
HMGB3O15347 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC15.55■□□□□ 0.08
HMGB3O15347 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
HMGB3O15347 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC15.55■□□□□ 0.08
HMGB3O15347 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
HMGB3O15347 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
HMGB3O15347 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
HMGB3O15347 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
HMGB3O15347 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
HMGB3O15347 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
HMGB3O15347 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
HMGB3O15347 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC15.55■□□□□ 0.08
HMGB3O15347 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
HMGB3O15347 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC15.55■□□□□ 0.08
HMGB3O15347 GRAMD4P2-201ENST00000423297 1097 ntBASIC15.55■□□□□ 0.08
HMGB3O15347 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC15.55■□□□□ 0.08
HMGB3O15347 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
HMGB3O15347 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC15.55■□□□□ 0.08
HMGB3O15347 AC008764.7-201ENST00000593779 1081 ntBASIC15.55■□□□□ 0.08
HMGB3O15347 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC15.55■□□□□ 0.08
HMGB3O15347 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
HMGB3O15347 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
HMGB3O15347 FOSL2-201ENST00000264716 6708 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
HMGB3O15347 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
HMGB3O15347 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
HMGB3O15347 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
HMGB3O15347 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
HMGB3O15347 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
HMGB3O15347 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
HMGB3O15347 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
HMGB3O15347 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
HMGB3O15347 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
HMGB3O15347 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
HMGB3O15347 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC15.54■□□□□ 0.08
HMGB3O15347 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
HMGB3O15347 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
HMGB3O15347 KRT16P2-201ENST00000414673 1423 ntBASIC15.54■□□□□ 0.08
HMGB3O15347 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
HMGB3O15347 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
HMGB3O15347 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
HMGB3O15347 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
HMGB3O15347 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
HMGB3O15347 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
HMGB3O15347 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC15.54■□□□□ 0.08
HMGB3O15347 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC15.54■□□□□ 0.08
HMGB3O15347 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
HMGB3O15347 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
HMGB3O15347 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC15.54■□□□□ 0.08
HMGB3O15347 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC15.54■□□□□ 0.08
HMGB3O15347 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
HMGB3O15347 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC15.54■□□□□ 0.08
HMGB3O15347 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC15.54■□□□□ 0.08
HMGB3O15347 AL035685.1-201ENST00000636663 812 ntBASIC15.54■□□□□ 0.08
HMGB3O15347 WAC-202ENST00000347934 2839 ntTSL 5 BASIC15.54■□□□□ 0.08
HMGB3O15347 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
HMGB3O15347 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
HMGB3O15347 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
HMGB3O15347 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
HMGB3O15347 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
HMGB3O15347 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
HMGB3O15347 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
HMGB3O15347 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
HMGB3O15347 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC15.54■□□□□ 0.08
HMGB3O15347 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC15.54■□□□□ 0.08
HMGB3O15347 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
HMGB3O15347 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
HMGB3O15347 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
HMGB3O15347 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
HMGB3O15347 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC15.53■□□□□ 0.08
HMGB3O15347 AL133373.2-201ENST00000623187 2828 ntBASIC15.53■□□□□ 0.08
HMGB3O15347 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC15.53■□□□□ 0.08
HMGB3O15347 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
HMGB3O15347 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
HMGB3O15347 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
HMGB3O15347 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC15.53■□□□□ 0.08
HMGB3O15347 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC15.53■□□□□ 0.08
HMGB3O15347 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
HMGB3O15347 AC009113.1-201ENST00000570267 2443 ntBASIC15.53■□□□□ 0.08
HMGB3O15347 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC15.53■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms