Protein–RNA interactions for Protein: O14627

CDX4, Homeobox protein CDX-4, humanhuman

Predicted RBP Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX4O14627 BUB3-202ENST00000368859 667 ntTSL 3 BASIC18.69■□□□□ 0.58
CDX4O14627 AL022342.1-201ENST00000400363 863 ntBASIC18.69■□□□□ 0.58
CDX4O14627 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC18.69■□□□□ 0.58
CDX4O14627 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC18.69■□□□□ 0.58
CDX4O14627 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC18.69■□□□□ 0.58
CDX4O14627 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC18.69■□□□□ 0.58
CDX4O14627 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CDX4O14627 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CDX4O14627 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CDX4O14627 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CDX4O14627 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CDX4O14627 AF106564.1-201ENST00000607058 2553 ntBASIC18.68■□□□□ 0.58
CDX4O14627 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC18.68■□□□□ 0.58
CDX4O14627 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CDX4O14627 TBC1D3P2-202ENST00000577902 1649 ntBASIC18.68■□□□□ 0.58
CDX4O14627 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CDX4O14627 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC18.68■□□□□ 0.58
CDX4O14627 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC18.68■□□□□ 0.58
CDX4O14627 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC18.68■□□□□ 0.58
CDX4O14627 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC18.68■□□□□ 0.58
CDX4O14627 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC18.68■□□□□ 0.58
CDX4O14627 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC18.68■□□□□ 0.58
CDX4O14627 AP002414.4-201ENST00000589764 1148 ntBASIC18.68■□□□□ 0.58
CDX4O14627 AL031008.1-201ENST00000619963 541 ntBASIC18.68■□□□□ 0.58
CDX4O14627 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CDX4O14627 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC18.68■□□□□ 0.58
CDX4O14627 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC18.68■□□□□ 0.58
CDX4O14627 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CDX4O14627 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CDX4O14627 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CDX4O14627 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
CDX4O14627 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CDX4O14627 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC18.68■□□□□ 0.58
CDX4O14627 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CDX4O14627 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CDX4O14627 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CDX4O14627 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CDX4O14627 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CDX4O14627 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
CDX4O14627 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC18.67■□□□□ 0.58
CDX4O14627 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
CDX4O14627 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CDX4O14627 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CDX4O14627 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CDX4O14627 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CDX4O14627 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC18.67■□□□□ 0.58
CDX4O14627 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC18.67■□□□□ 0.58
CDX4O14627 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC18.67■□□□□ 0.58
CDX4O14627 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
CDX4O14627 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC18.67■□□□□ 0.58
CDX4O14627 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC18.67■□□□□ 0.58
CDX4O14627 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CDX4O14627 AC034232.1-201ENST00000506026 1064 ntBASIC18.67■□□□□ 0.58
CDX4O14627 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC18.67■□□□□ 0.58
CDX4O14627 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
CDX4O14627 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CDX4O14627 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CDX4O14627 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC18.67■□□□□ 0.58
CDX4O14627 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CDX4O14627 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CDX4O14627 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
CDX4O14627 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CDX4O14627 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
CDX4O14627 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC18.66■□□□□ 0.58
CDX4O14627 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC18.66■□□□□ 0.58
CDX4O14627 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CDX4O14627 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
CDX4O14627 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CDX4O14627 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CDX4O14627 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CDX4O14627 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CDX4O14627 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CDX4O14627 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CDX4O14627 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CDX4O14627 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CDX4O14627 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CDX4O14627 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CDX4O14627 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CDX4O14627 AP000593.1-201ENST00000393668 712 ntBASIC18.66■□□□□ 0.58
CDX4O14627 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CDX4O14627 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CDX4O14627 TSPY19P-201ENST00000418461 509 ntBASIC18.66■□□□□ 0.58
CDX4O14627 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC18.66■□□□□ 0.58
CDX4O14627 TSPY18P-201ENST00000441642 509 ntBASIC18.66■□□□□ 0.58
CDX4O14627 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC18.66■□□□□ 0.58
CDX4O14627 AL160237.2-201ENST00000556165 472 ntBASIC18.66■□□□□ 0.58
CDX4O14627 MPI-205ENST00000562606 1052 ntTSL 3 BASIC18.66■□□□□ 0.58
CDX4O14627 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC18.66■□□□□ 0.58
CDX4O14627 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CDX4O14627 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
CDX4O14627 AP001271.2-201ENST00000624018 1556 ntBASIC18.66■□□□□ 0.58
CDX4O14627 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC18.66■□□□□ 0.58
CDX4O14627 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CDX4O14627 BID-212ENST00000614949 1988 ntTSL 5 BASIC18.66■□□□□ 0.58
CDX4O14627 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC18.66■□□□□ 0.58
CDX4O14627 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
CDX4O14627 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
CDX4O14627 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
CDX4O14627 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CDX4O14627 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC18.65■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms