Protein–RNA interactions for Protein: A6NMK7

CPSF4L, Putative cleavage and polyadenylation specificity factor subunit 4-like protein, humanhuman

Known RBP Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4LA6NMK7 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CPSF4LA6NMK7 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC17.84■□□□□ 0.45
CPSF4LA6NMK7 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CPSF4LA6NMK7 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC17.84■□□□□ 0.45
CPSF4LA6NMK7 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC17.84■□□□□ 0.45
CPSF4LA6NMK7 PPP1R14BP2-201ENST00000426284 444 ntBASIC17.84■□□□□ 0.45
CPSF4LA6NMK7 NCF1B-203ENST00000435988 1254 ntBASIC17.84■□□□□ 0.45
CPSF4LA6NMK7 GATS-209ENST00000454084 1030 ntTSL 3 BASIC17.84■□□□□ 0.45
CPSF4LA6NMK7 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC17.84■□□□□ 0.45
CPSF4LA6NMK7 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CPSF4LA6NMK7 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC17.84■□□□□ 0.45
CPSF4LA6NMK7 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC17.84■□□□□ 0.45
CPSF4LA6NMK7 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CPSF4LA6NMK7 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CPSF4LA6NMK7 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CPSF4LA6NMK7 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CPSF4LA6NMK7 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CPSF4LA6NMK7 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC17.84■□□□□ 0.45
CPSF4LA6NMK7 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC17.84■□□□□ 0.45
CPSF4LA6NMK7 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
CPSF4LA6NMK7 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
CPSF4LA6NMK7 ZNF815P-204ENST00000434898 1737 ntBASIC17.84■□□□□ 0.45
CPSF4LA6NMK7 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CPSF4LA6NMK7 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.45
CPSF4LA6NMK7 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC17.83■□□□□ 0.45
CPSF4LA6NMK7 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
CPSF4LA6NMK7 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
CPSF4LA6NMK7 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
CPSF4LA6NMK7 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
CPSF4LA6NMK7 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC17.83■□□□□ 0.45
CPSF4LA6NMK7 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
CPSF4LA6NMK7 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
CPSF4LA6NMK7 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC17.83■□□□□ 0.45
CPSF4LA6NMK7 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC17.83■□□□□ 0.45
CPSF4LA6NMK7 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC17.83■□□□□ 0.45
CPSF4LA6NMK7 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
CPSF4LA6NMK7 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
CPSF4LA6NMK7 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
CPSF4LA6NMK7 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
CPSF4LA6NMK7 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC17.83■□□□□ 0.44
CPSF4LA6NMK7 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC17.83■□□□□ 0.44
CPSF4LA6NMK7 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
CPSF4LA6NMK7 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
CPSF4LA6NMK7 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC17.83■□□□□ 0.44
CPSF4LA6NMK7 AC097658.1-201ENST00000475555 843 ntBASIC17.83■□□□□ 0.44
CPSF4LA6NMK7 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CPSF4LA6NMK7 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
CPSF4LA6NMK7 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC17.83■□□□□ 0.44
CPSF4LA6NMK7 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC17.83■□□□□ 0.44
CPSF4LA6NMK7 MIR4758-201ENST00000577688 71 ntBASIC17.83■□□□□ 0.44
CPSF4LA6NMK7 PFKL-212ENST00000628044 129 ntTSL 3 BASIC17.83■□□□□ 0.44
CPSF4LA6NMK7 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CPSF4LA6NMK7 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CPSF4LA6NMK7 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CPSF4LA6NMK7 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
CPSF4LA6NMK7 TEX21P-204ENST00000641479 1693 ntBASIC17.83■□□□□ 0.44
CPSF4LA6NMK7 AC090340.1-201ENST00000620778 4980 ntBASIC17.83■□□□□ 0.44
CPSF4LA6NMK7 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC17.83■□□□□ 0.44
CPSF4LA6NMK7 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
CPSF4LA6NMK7 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
CPSF4LA6NMK7 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CPSF4LA6NMK7 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CPSF4LA6NMK7 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
CPSF4LA6NMK7 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CPSF4LA6NMK7 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CPSF4LA6NMK7 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CPSF4LA6NMK7 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC17.82■□□□□ 0.44
CPSF4LA6NMK7 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CPSF4LA6NMK7 AL161938.1-201ENST00000569833 2180 ntBASIC17.82■□□□□ 0.44
CPSF4LA6NMK7 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CPSF4LA6NMK7 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CPSF4LA6NMK7 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC17.82■□□□□ 0.44
CPSF4LA6NMK7 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC17.82■□□□□ 0.44
CPSF4LA6NMK7 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC17.82■□□□□ 0.44
CPSF4LA6NMK7 REXO2-208ENST00000539754 791 ntTSL 2 BASIC17.82■□□□□ 0.44
CPSF4LA6NMK7 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC17.82■□□□□ 0.44
CPSF4LA6NMK7 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC17.82■□□□□ 0.44
CPSF4LA6NMK7 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CPSF4LA6NMK7 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC17.82■□□□□ 0.44
CPSF4LA6NMK7 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC17.82■□□□□ 0.44
CPSF4LA6NMK7 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
CPSF4LA6NMK7 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
CPSF4LA6NMK7 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC17.82■□□□□ 0.44
CPSF4LA6NMK7 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CPSF4LA6NMK7 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
CPSF4LA6NMK7 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC17.82■□□□□ 0.44
CPSF4LA6NMK7 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
CPSF4LA6NMK7 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CPSF4LA6NMK7 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
CPSF4LA6NMK7 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
CPSF4LA6NMK7 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CPSF4LA6NMK7 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC17.81■□□□□ 0.44
CPSF4LA6NMK7 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CPSF4LA6NMK7 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CPSF4LA6NMK7 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC17.81■□□□□ 0.44
CPSF4LA6NMK7 GOLGA6L3-201ENST00000507199 1679 ntBASIC17.81■□□□□ 0.44
CPSF4LA6NMK7 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC17.81■□□□□ 0.44
CPSF4LA6NMK7 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC17.81■□□□□ 0.44
CPSF4LA6NMK7 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CPSF4LA6NMK7 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC17.81■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms