Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 BPIFC-203ENST00000397452 2091 ntAPPRIS P1 TSL 5 BASIC10.87□□□□□ -0.67
MSH5O43196 LINC01291-201ENST00000377469 3662 ntTSL 2 BASIC10.87□□□□□ -0.67
MSH5O43196 GTDC1-220ENST00000618778 2317 ntTSL 5 BASIC10.87□□□□□ -0.67
MSH5O43196 CABLES1-202ENST00000400473 1544 ntAPPRIS ALT2 TSL 2 BASIC10.87□□□□□ -0.67
MSH5O43196 NRXN1-211ENST00000406859 2553 ntTSL 5 BASIC10.87□□□□□ -0.67
MSH5O43196 ABHD18-201ENST00000388795 5450 ntTSL 5 BASIC10.87□□□□□ -0.67
MSH5O43196 NEDD9-208ENST00000504387 3211 ntAPPRIS ALT2 TSL 2 BASIC10.87□□□□□ -0.67
MSH5O43196 EYA3-203ENST00000373871 6085 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
MSH5O43196 AC012618.3-201ENST00000415793 2042 ntTSL 5 BASIC10.87□□□□□ -0.67
MSH5O43196 SPRY1-202ENST00000394339 2504 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
MSH5O43196 CCT5-201ENST00000280326 3675 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
MSH5O43196 CPM-201ENST00000338356 6636 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
MSH5O43196 PDCD1LG2-201ENST00000397747 2365 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
MSH5O43196 ATMIN-206ENST00000566488 5343 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
MSH5O43196 THAP12P1-201ENST00000398672 2203 ntBASIC10.86□□□□□ -0.67
MSH5O43196 ZNF138-206ENST00000440598 2230 ntTSL 2 BASIC10.86□□□□□ -0.67
MSH5O43196 ELF4-202ENST00000335997 4145 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
MSH5O43196 PAPPA2-202ENST00000367662 9691 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
MSH5O43196 PAX6-270ENST00000640368 6975 ntAPPRIS P4 TSL 5 BASIC10.86□□□□□ -0.67
MSH5O43196 AC091940.1-204ENST00000507318 3091 ntTSL 2 BASIC10.86□□□□□ -0.67
MSH5O43196 TMEM72-AS1-201ENST00000450287 3300 ntTSL 2 BASIC10.86□□□□□ -0.67
MSH5O43196 LINC02418-202ENST00000567788 4592 ntTSL 2 BASIC10.86□□□□□ -0.67
MSH5O43196 ZC3H6-201ENST00000343936 11539 ntAPPRIS P1 TSL 2 BASIC10.86□□□□□ -0.67
MSH5O43196 CCAR1-218ENST00000630771 4540 ntTSL 5 BASIC10.86□□□□□ -0.67
MSH5O43196 MAP9-201ENST00000311277 7333 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
MSH5O43196 FAM168A-201ENST00000064778 7296 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
MSH5O43196 ZNF791-201ENST00000343325 4554 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
MSH5O43196 SNORA71D-201ENST00000363484 134 ntBASIC10.86□□□□□ -0.67
MSH5O43196 RNU6-407P-201ENST00000365280 104 ntBASIC10.86□□□□□ -0.67
MSH5O43196 RNU6-588P-201ENST00000410281 105 ntBASIC10.86□□□□□ -0.67
MSH5O43196 RN7SKP89-201ENST00000410774 242 ntBASIC10.86□□□□□ -0.67
MSH5O43196 AL136140.1-201ENST00000436113 473 ntTSL 3 BASIC10.86□□□□□ -0.67
MSH5O43196 GAPDHP58-201ENST00000438477 1006 ntBASIC10.86□□□□□ -0.67
MSH5O43196 AC080129.1-201ENST00000457815 406 ntTSL 3 BASIC10.86□□□□□ -0.67
MSH5O43196 RNU7-179P-201ENST00000516608 68 ntBASIC10.86□□□□□ -0.67
MSH5O43196 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC10.86□□□□□ -0.67
MSH5O43196 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC10.86□□□□□ -0.67
MSH5O43196 AC084851.1-201ENST00000529105 249 ntBASIC10.86□□□□□ -0.67
MSH5O43196 AP001973.1-201ENST00000530177 572 ntTSL 4 BASIC10.86□□□□□ -0.67
MSH5O43196 AC092490.1-202ENST00000540299 809 ntTSL 3 BASIC10.86□□□□□ -0.67
MSH5O43196 DLST-216ENST00000626051 252 ntTSL 5 BASIC10.86□□□□□ -0.67
MSH5O43196 LAMTOR5-AS1-248ENST00000630488 703 ntTSL 5 BASIC10.86□□□□□ -0.67
MSH5O43196 SLFN11-202ENST00000394566 5030 ntAPPRIS P1 TSL 2 BASIC10.86□□□□□ -0.67
MSH5O43196 AC134026.1-201ENST00000623249 2239 ntBASIC10.86□□□□□ -0.67
MSH5O43196 PRIM2-207ENST00000615550 2308 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
MSH5O43196 Z99129.4-201ENST00000624649 2435 ntBASIC10.86□□□□□ -0.67
MSH5O43196 BMX-202ENST00000348343 2531 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
MSH5O43196 ANKFY1-209ENST00000574367 5033 ntAPPRIS P3 TSL 1 (best) BASIC10.85□□□□□ -0.67
MSH5O43196 SMG7-202ENST00000367537 5970 ntAPPRIS ALT2 TSL 5 BASIC10.85□□□□□ -0.67
MSH5O43196 TFRC-203ENST00000420415 4814 ntAPPRIS ALT2 TSL 1 (best) BASIC10.85□□□□□ -0.67
MSH5O43196 NBPF12-202ENST00000579935 5035 ntAPPRIS ALT2 TSL 5 BASIC10.85□□□□□ -0.67
MSH5O43196 HSD17B13-201ENST00000302219 2269 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
MSH5O43196 U3.1-201ENST00000362500 215 ntBASIC10.85□□□□□ -0.67
MSH5O43196 SNORA51.5-201ENST00000384126 131 ntBASIC10.85□□□□□ -0.67
MSH5O43196 DEFB115-201ENST00000400552 267 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
MSH5O43196 AC009269.1-202ENST00000484381 469 ntBASIC10.85□□□□□ -0.67
MSH5O43196 AC114964.1-201ENST00000502306 1111 ntBASIC10.85□□□□□ -0.67
MSH5O43196 CSN1S1-203ENST00000507763 597 ntAPPRIS ALT2 TSL 5 BASIC10.85□□□□□ -0.67
MSH5O43196 SNORA40.9-201ENST00000515895 93 ntBASIC10.85□□□□□ -0.67
MSH5O43196 RN7SKP70-201ENST00000516655 271 ntBASIC10.85□□□□□ -0.67
MSH5O43196 AL133271.1-201ENST00000538229 291 ntBASIC10.85□□□□□ -0.67
MSH5O43196 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
MSH5O43196 MIR3646-201ENST00000578301 84 ntBASIC10.85□□□□□ -0.67
MSH5O43196 Z98949.1-211ENST00000596813 773 ntTSL 5 BASIC10.85□□□□□ -0.67
MSH5O43196 GATAD2B-203ENST00000634408 1825 ntTSL 5 BASIC10.85□□□□□ -0.67
MSH5O43196 ABCA4-201ENST00000370225 7309 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
MSH5O43196 RABEP1-201ENST00000341923 2490 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
MSH5O43196 LCA5-201ENST00000369846 4542 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
MSH5O43196 CLUAP1-212ENST00000576634 4163 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
MSH5O43196 HDAC9-218ENST00000456174 2307 ntTSL 2 BASIC10.85□□□□□ -0.67
MSH5O43196 CYP4A11-204ENST00000462347 1775 ntTSL 5 BASIC10.85□□□□□ -0.67
MSH5O43196 CCR3-208ENST00000545097 1786 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
MSH5O43196 TANC1-201ENST00000263635 7470 ntAPPRIS P1 TSL 5 BASIC10.85□□□□□ -0.67
MSH5O43196 PROM1-206ENST00000505450 4349 ntAPPRIS ALT2 TSL 1 (best) BASIC10.85□□□□□ -0.67
MSH5O43196 TENM2-203ENST00000518659 8550 ntAPPRIS P1 TSL 5 BASIC10.85□□□□□ -0.67
MSH5O43196 CCL28-201ENST00000361115 3126 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
MSH5O43196 AL359396.1-201ENST00000623151 2376 ntBASIC10.84□□□□□ -0.67
MSH5O43196 IL1RAP-213ENST00000447382 4769 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
MSH5O43196 CTNND1-232ENST00000532649 6026 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
MSH5O43196 LINC00689-203ENST00000438049 3946 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
MSH5O43196 TARS-201ENST00000265112 4314 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
MSH5O43196 A2ML1-205ENST00000539547 3460 ntTSL 2 BASIC10.84□□□□□ -0.67
MSH5O43196 GNPAT-201ENST00000366647 2643 ntAPPRIS P2 TSL 1 (best) BASIC10.84□□□□□ -0.67
MSH5O43196 DNAH1-201ENST00000420323 13104 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
MSH5O43196 CDH18-201ENST00000274170 2809 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
MSH5O43196 LTBP1-202ENST00000404525 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC10.84□□□□□ -0.67
MSH5O43196 BACE1-202ENST00000392937 5155 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
MSH5O43196 SPP2-201ENST00000168148 1024 ntAPPRIS P2 TSL 1 (best) BASIC10.84□□□□□ -0.67
MSH5O43196 AL356432.2-201ENST00000407841 422 ntBASIC10.84□□□□□ -0.67
MSH5O43196 AL133384.1-201ENST00000412744 351 ntBASIC10.84□□□□□ -0.67
MSH5O43196 BX323845.3-201ENST00000428215 527 ntBASIC10.84□□□□□ -0.67
MSH5O43196 SLC36A1-202ENST00000429484 977 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
MSH5O43196 HBBP1-201ENST00000433329 439 ntBASIC10.84□□□□□ -0.67
MSH5O43196 RPS15AP5-201ENST00000436276 388 ntBASIC10.84□□□□□ -0.67
MSH5O43196 AC008264.1-201ENST00000447612 367 ntBASIC10.84□□□□□ -0.67
MSH5O43196 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC10.84□□□□□ -0.67
MSH5O43196 Y_RNA.649-201ENST00000459077 103 ntBASIC10.84□□□□□ -0.67
MSH5O43196 RN7SL146P-201ENST00000472338 297 ntBASIC10.84□□□□□ -0.67
MSH5O43196 MRPS33-209ENST00000496958 688 ntAPPRIS P1 TSL 3 BASIC10.84□□□□□ -0.67
MSH5O43196 IGKV2D-10-201ENST00000520194 281 ntBASIC10.84□□□□□ -0.67
Retrieved 100 of 98,524 protein–RNA pairs in 149.9 ms