Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AL035078.2-201ENST00000533832 326 ntTSL 3 BASIC5.18□□□□□ -1.58
MSX2P35548 MRPL42-204ENST00000548545 692 ntAPPRIS ALT1 TSL 2 BASIC5.18□□□□□ -1.58
MSX2P35548 PCLAF-207ENST00000559519 749 ntTSL 2 BASIC5.18□□□□□ -1.58
MSX2P35548 AC016987.2-201ENST00000560696 351 ntTSL 3 BASIC5.18□□□□□ -1.58
MSX2P35548 AC040958.1-201ENST00000561102 201 ntBASIC5.18□□□□□ -1.58
MSX2P35548 AC022884.3-201ENST00000579571 248 ntBASIC5.18□□□□□ -1.58
MSX2P35548 DIAPH2-AS1-204ENST00000579945 974 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
MSX2P35548 AC091691.2-201ENST00000581940 567 ntTSL 4 BASIC5.18□□□□□ -1.58
MSX2P35548 FGF7P1-201ENST00000582820 288 ntBASIC5.18□□□□□ -1.58
MSX2P35548 AL121989.1-201ENST00000585888 746 ntTSL 3 BASIC5.18□□□□□ -1.58
MSX2P35548 AL157938.2-204ENST00000589667 826 ntTSL 5 BASIC5.18□□□□□ -1.58
MSX2P35548 AC097467.3-204ENST00000595229 827 ntTSL 5 BASIC5.18□□□□□ -1.58
MSX2P35548 AC063977.5-201ENST00000601044 974 ntBASIC5.18□□□□□ -1.58
MSX2P35548 AP000860.1-201ENST00000605250 559 ntBASIC5.18□□□□□ -1.58
MSX2P35548 AL158211.4-201ENST00000606988 584 ntBASIC5.18□□□□□ -1.58
MSX2P35548 RNU4-89P-201ENST00000607443 133 ntBASIC5.18□□□□□ -1.58
MSX2P35548 AC098614.4-201ENST00000607601 462 ntBASIC5.18□□□□□ -1.58
MSX2P35548 LAMTOR5-AS1-217ENST00000608152 407 ntTSL 5 BASIC5.18□□□□□ -1.58
MSX2P35548 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC5.18□□□□□ -1.58
MSX2P35548 AC012150.2-201ENST00000621300 544 ntBASIC5.18□□□□□ -1.58
MSX2P35548 AC004009.2-201ENST00000623016 728 ntBASIC5.18□□□□□ -1.58
MSX2P35548 AP000648.2-201ENST00000624182 404 ntBASIC5.18□□□□□ -1.58
MSX2P35548 AC012593.1-212ENST00000627058 580 ntTSL 5 BASIC5.18□□□□□ -1.58
MSX2P35548 AC099654.5-201ENST00000636479 350 ntBASIC5.18□□□□□ -1.58
MSX2P35548 MIR3688-2-201ENST00000636963 87 ntBASIC5.18□□□□□ -1.58
MSX2P35548 FAM157B-203ENST00000639350 358 ntBASIC5.18□□□□□ -1.58
MSX2P35548 PCDH15-215ENST00000409834 5401 ntTSL 5 BASIC5.18□□□□□ -1.58
MSX2P35548 NEK11-207ENST00000508196 1938 ntAPPRIS P3 TSL 2 BASIC5.18□□□□□ -1.58
MSX2P35548 SEC31A-201ENST00000264405 3447 ntTSL 2 BASIC5.18□□□□□ -1.58
MSX2P35548 SCN11A-202ENST00000444237 5729 ntAPPRIS ALT2 TSL 5 BASIC5.18□□□□□ -1.58
MSX2P35548 ARHGAP28-205ENST00000531294 2171 ntAPPRIS ALT2 TSL 5 BASIC5.18□□□□□ -1.58
MSX2P35548 ZEB1-219ENST00000560721 3368 ntAPPRIS ALT2 TSL 2 BASIC5.18□□□□□ -1.58
MSX2P35548 PLEKHA1-203ENST00000368990 14010 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
MSX2P35548 STAMBPL1-202ENST00000371924 2208 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
MSX2P35548 B3GALT2-201ENST00000367434 3274 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
MSX2P35548 PIAS2-204ENST00000585916 11075 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
MSX2P35548 TRAT1-202ENST00000426646 1596 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
MSX2P35548 DPP8-210ENST00000559233 2953 ntAPPRIS P4 TSL 2 BASIC5.17□□□□□ -1.58
MSX2P35548 UBE3A-205ENST00000566215 3176 ntAPPRIS P3 TSL 1 (best) BASIC5.17□□□□□ -1.58
MSX2P35548 HEATR5A-203ENST00000543095 7840 ntAPPRIS P1 TSL 5 BASIC5.17□□□□□ -1.58
MSX2P35548 SLC24A2-202ENST00000341998 10749 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
MSX2P35548 WDR12-201ENST00000261015 8100 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
MSX2P35548 GNRHR-201ENST00000226413 2164 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
MSX2P35548 STXBP4-202ENST00000398391 2160 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
MSX2P35548 CXCL9-201ENST00000264888 2740 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
MSX2P35548 AL031595.2-201ENST00000624215 19071 ntBASIC5.17□□□□□ -1.58
MSX2P35548 OR2B2-201ENST00000303324 1212 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
MSX2P35548 OR6C2-201ENST00000322678 939 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
MSX2P35548 RNU6-839P-201ENST00000363347 108 ntBASIC5.17□□□□□ -1.58
MSX2P35548 RNA5SP88-201ENST00000365560 109 ntBASIC5.17□□□□□ -1.58
MSX2P35548 RNA5SP122-201ENST00000384457 108 ntBASIC5.17□□□□□ -1.58
MSX2P35548 RNU6-297P-201ENST00000384636 107 ntBASIC5.17□□□□□ -1.58
MSX2P35548 snosnR66.1-201ENST00000391095 99 ntBASIC5.17□□□□□ -1.58
MSX2P35548 OR5H8-201ENST00000394191 1045 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
MSX2P35548 ARL4A-204ENST00000396664 1144 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
MSX2P35548 CTSL3P-202ENST00000412179 788 ntBASIC5.17□□□□□ -1.58
MSX2P35548 HMGN1P14-201ENST00000412459 517 ntBASIC5.17□□□□□ -1.58
MSX2P35548 AC099654.1-202ENST00000415836 564 ntTSL 4 BASIC5.17□□□□□ -1.58
MSX2P35548 AC078883.1-203ENST00000416080 654 ntTSL 3 BASIC5.17□□□□□ -1.58
MSX2P35548 AC009237.2-201ENST00000421358 284 ntBASIC5.17□□□□□ -1.58
MSX2P35548 TMEM196-203ENST00000422233 775 ntTSL 5 BASIC5.17□□□□□ -1.58
MSX2P35548 LINC01799-202ENST00000426260 625 ntTSL 3 BASIC5.17□□□□□ -1.58
MSX2P35548 AC115283.1-201ENST00000427353 400 ntBASIC5.17□□□□□ -1.58
MSX2P35548 AC104843.2-201ENST00000427666 297 ntBASIC5.17□□□□□ -1.58
MSX2P35548 AL512649.1-201ENST00000428997 581 ntBASIC5.17□□□□□ -1.58
MSX2P35548 CA1-201ENST00000431316 1232 ntAPPRIS P1 TSL 5 BASIC5.17□□□□□ -1.58
MSX2P35548 USP12PX-201ENST00000432383 1057 ntBASIC5.17□□□□□ -1.58
MSX2P35548 AC018742.1-201ENST00000435237 488 ntTSL 3 BASIC5.17□□□□□ -1.58
MSX2P35548 AC076966.1-201ENST00000435560 351 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
MSX2P35548 MTND4LP16-201ENST00000440828 295 ntBASIC5.17□□□□□ -1.58
MSX2P35548 MTATP6P30-201ENST00000443540 664 ntBASIC5.17□□□□□ -1.58
MSX2P35548 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC5.17□□□□□ -1.58
MSX2P35548 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC5.17□□□□□ -1.58
MSX2P35548 AL034418.1-201ENST00000448675 860 ntBASIC5.17□□□□□ -1.58
MSX2P35548 AC132807.1-201ENST00000449613 458 ntTSL 3 BASIC5.17□□□□□ -1.58
MSX2P35548 AC068707.1-201ENST00000451438 391 ntTSL 3 BASIC5.17□□□□□ -1.58
MSX2P35548 AC096666.1-201ENST00000454965 348 ntTSL 3 BASIC5.17□□□□□ -1.58
MSX2P35548 AC146507.1-201ENST00000468335 354 ntBASIC5.17□□□□□ -1.58
MSX2P35548 RPL15P21-201ENST00000495592 567 ntBASIC5.17□□□□□ -1.58
MSX2P35548 AC104071.1-201ENST00000505636 602 ntTSL 3 BASIC5.17□□□□□ -1.58
MSX2P35548 SNX5P1-201ENST00000505757 1041 ntBASIC5.17□□□□□ -1.58
MSX2P35548 NREP-AS1-202ENST00000507222 610 ntTSL 3 BASIC5.17□□□□□ -1.58
MSX2P35548 LINC02383-201ENST00000508563 582 ntTSL 3 BASIC5.17□□□□□ -1.58
MSX2P35548 LINC02200-202ENST00000508879 615 ntTSL 3 BASIC5.17□□□□□ -1.58
MSX2P35548 LINC02496-201ENST00000509559 584 ntTSL 3 BASIC5.17□□□□□ -1.58
MSX2P35548 AC091133.4-201ENST00000511142 308 ntBASIC5.17□□□□□ -1.58
MSX2P35548 SPRY4-AS1-205ENST00000514303 152 ntTSL 3 BASIC5.17□□□□□ -1.58
MSX2P35548 LINC01947-201ENST00000523742 566 ntTSL 4 BASIC5.17□□□□□ -1.58
MSX2P35548 ARL6IP1P3-201ENST00000524544 560 ntBASIC5.17□□□□□ -1.58
MSX2P35548 AC087276.1-201ENST00000529659 480 ntBASIC5.17□□□□□ -1.58
MSX2P35548 AC005363.1-201ENST00000530779 351 ntBASIC5.17□□□□□ -1.58
MSX2P35548 AC022367.1-202ENST00000535066 537 ntTSL 3 BASIC5.17□□□□□ -1.58
MSX2P35548 AC117505.1-202ENST00000547027 566 ntTSL 3 BASIC5.17□□□□□ -1.58
MSX2P35548 AC009135.1-201ENST00000549303 776 ntTSL 2 BASIC5.17□□□□□ -1.58
MSX2P35548 AC005304.3-201ENST00000581533 511 ntTSL 3 BASIC5.17□□□□□ -1.58
MSX2P35548 AC090403.1-204ENST00000582893 572 ntTSL 4 BASIC5.17□□□□□ -1.58
MSX2P35548 H3F3BP2-201ENST00000583907 357 ntBASIC5.17□□□□□ -1.58
MSX2P35548 ERVK-28-203ENST00000600419 457 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
MSX2P35548 AC024563.1-201ENST00000601860 618 ntTSL 2 BASIC5.17□□□□□ -1.58
MSX2P35548 FAM27E4-201ENST00000605259 342 ntBASIC5.17□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 75 ms