RNA–Protein interactions for RNA: ENST00000607443.1

RNU4-89P-201, Transcript of RNA, U4 small nuclear 89, pseudogene, humanhuman

BASIC

Gene RNU4-89P, Length 133 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-89P-201ENST00000607443 AEBP2Q6ZN18 517 aaPredicted RBP28■■■□□ 2.07
RNU4-89P-201ENST00000607443 CHIC1Q5VXU3 224 aa26.2■■□□□ 1.78
RNU4-89P-201ENST00000607443 SENP3Q9H4L4 574 aaPredicted RBP23.93■■□□□ 1.42
RNU4-89P-201ENST00000607443 PHF23Q9BUL5 403 aaPredicted RBP23.6■■□□□ 1.37
RNU4-89P-201ENST00000607443 FOXD1Q16676 465 aa22.37■■□□□ 1.17
RNU4-89P-201ENST00000607443 POTEDQ86YR6 584 aa21.25■□□□□ 0.99
RNU4-89P-201ENST00000607443 MSH5O43196 834 aa21.08■□□□□ 0.97
RNU4-89P-201ENST00000607443 PIAS4Q8N2W9 510 aaPredicted RBP20.78■□□□□ 0.92
RNU4-89P-201ENST00000607443 PLPPR3Q6T4P5 718 aa20.75■□□□□ 0.91
RNU4-89P-201ENST00000607443 PPP6R1Q9UPN7 881 aa20.63■□□□□ 0.89
RNU4-89P-201ENST00000607443 ADRA2BP18089 450 aa20.53■□□□□ 0.88
RNU4-89P-201ENST00000607443 MAPK8IP2Q13387 824 aaPredicted RBP18.99■□□□□ 0.63
RNU4-89P-201ENST00000607443 DMRT2Q9Y5R5 561 aa18.92■□□□□ 0.62
RNU4-89P-201ENST00000607443 SCAF1Q9H7N4 1312 aaKnown RBP18.78■□□□□ 0.6
RNU4-89P-201ENST00000607443 CACNB1Q02641 598 aaPredicted RBP18.34■□□□□ 0.53
RNU4-89P-201ENST00000607443 DCAF8L1A6NGE4 600 aa18.15■□□□□ 0.5
RNU4-89P-201ENST00000607443 PPP4R3CPQ6ZMV5 832 aa18.14■□□□□ 0.49
RNU4-89P-201ENST00000607443 HOXD11P31277 338 aaPredicted RBP18.08■□□□□ 0.48
RNU4-89P-201ENST00000607443 RNF39Q9H2S5 420 aa17.96■□□□□ 0.47
RNU4-89P-201ENST00000607443 CNKSR2Q8WXI2 1034 aa17.89■□□□□ 0.45
RNU4-89P-201ENST00000607443 RNF216Q9NWF9 866 aaPredicted RBP17.84■□□□□ 0.45
RNU4-89P-201ENST00000607443 C1QBPQ07021 282 aaKnown RBP17.68■□□□□ 0.42
RNU4-89P-201ENST00000607443 DNAJC5BQ9UF47 199 aa17.55■□□□□ 0.4
RNU4-89P-201ENST00000607443 NCBP3Q53F19 620 aaKnown RBP17.32■□□□□ 0.36
RNU4-89P-201ENST00000607443 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.22■□□□□ 0.35
RNU4-89P-201ENST00000607443 NPM3O75607 178 aaKnown RBP17.07■□□□□ 0.32
RNU4-89P-201ENST00000607443 U3KPZ7 1027 aaPredicted RBP16.81■□□□□ 0.28
RNU4-89P-201ENST00000607443 DSG3P32926 999 aa16.69■□□□□ 0.26
RNU4-89P-201ENST00000607443 SPINK5Q9NQ38 1064 aaPredicted RBP16.69■□□□□ 0.26
RNU4-89P-201ENST00000607443 CAPN15O75808 1086 aa16.67■□□□□ 0.26
RNU4-89P-201ENST00000607443 POTEHQ6S545 545 aa16.58■□□□□ 0.24
RNU4-89P-201ENST00000607443 SLC4A2P04920 1241 aa16.42■□□□□ 0.22
RNU4-89P-201ENST00000607443 KCNA4P22459 653 aa16.39■□□□□ 0.21
RNU4-89P-201ENST00000607443 TRHP20396 242 aaPredicted RBP16.32■□□□□ 0.2
RNU4-89P-201ENST00000607443 APLP2Q06481 763 aa16.28■□□□□ 0.2
RNU4-89P-201ENST00000607443 ZNF219Q9P2Y4 722 aaPredicted RBP16.26■□□□□ 0.19
RNU4-89P-201ENST00000607443 ABCB7O75027 752 aa16.24■□□□□ 0.19
RNU4-89P-201ENST00000607443 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.19■□□□□ 0.18
RNU4-89P-201ENST00000607443 HNRNPUL2Q1KMD3 747 aaKnown RBP16.19■□□□□ 0.18
RNU4-89P-201ENST00000607443 SAMD1Q6SPF0 538 aaPredicted RBP16.08■□□□□ 0.16
RNU4-89P-201ENST00000607443 RBM42Q9BTD8 480 aaKnown RBP15.91■□□□□ 0.14
RNU4-89P-201ENST00000607443 POLA2Q14181 598 aa15.8■□□□□ 0.12
RNU4-89P-201ENST00000607443 MYCNP04198 464 aaPredicted RBP15.78■□□□□ 0.12
RNU4-89P-201ENST00000607443 CHRDL2Q6WN34 429 aa15.73■□□□□ 0.11
RNU4-89P-201ENST00000607443 AKT1S1Q96B36 256 aa15.48■□□□□ 0.07
RNU4-89P-201ENST00000607443 ATF5Q9Y2D1 282 aaPredicted RBP15.48■□□□□ 0.07
RNU4-89P-201ENST00000607443 ZBTB12Q9Y330 459 aaPredicted RBP15.42■□□□□ 0.06
RNU4-89P-201ENST00000607443 FOXD4L1Q9NU39 408 aa15.41■□□□□ 0.06
RNU4-89P-201ENST00000607443 SLC4A1APQ9BWU0 796 aaKnown RBP15.39■□□□□ 0.05
RNU4-89P-201ENST00000607443 SP7Q8TDD2 431 aaPredicted RBP15.35■□□□□ 0.05
RNU4-89P-201ENST00000607443 REM2Q8IYK8 340 aaPredicted RBP15.34■□□□□ 0.05
RNU4-89P-201ENST00000607443 OSCARQ8IYS5 282 aa15.28■□□□□ 0.04
RNU4-89P-201ENST00000607443 PIP4P2Q8N4L2 257 aa15.28■□□□□ 0.04
RNU4-89P-201ENST00000607443 PITPNM1O00562 1244 aa15.16■□□□□ 0.02
RNU4-89P-201ENST00000607443 FXR2P51116 673 aaKnown RBP eCLIP15.13■□□□□ 0.01
RNU4-89P-201ENST00000607443 HAX1O00165 279 aa15.11■□□□□ 0.01
RNU4-89P-201ENST00000607443 ZBTB22O15209 634 aa15.06■□□□□ 0
RNU4-89P-201ENST00000607443 ATXN8OSP0DMR3 200 aa15□□□□□ -0.01
RNU4-89P-201ENST00000607443 SPDYE2BA6NHP3 402 aa14.92□□□□□ -0.02
RNU4-89P-201ENST00000607443 SPDYE6P0CI01 402 aa14.92□□□□□ -0.02
RNU4-89P-201ENST00000607443 SPDYE2Q495Y8 402 aa14.92□□□□□ -0.02
RNU4-89P-201ENST00000607443 EVX2Q03828 476 aa14.91□□□□□ -0.02
RNU4-89P-201ENST00000607443 FBLN2P98095 1184 aa14.88□□□□□ -0.03
RNU4-89P-201ENST00000607443 PRKAR2AP13861 404 aaKnown RBP14.77□□□□□ -0.05
RNU4-89P-201ENST00000607443 SPDYE1Q8NFV5 336 aaPredicted RBP14.76□□□□□ -0.05
RNU4-89P-201ENST00000607443 CLEC11AQ9Y240 323 aa14.76□□□□□ -0.05
RNU4-89P-201ENST00000607443 MKRN4PQ13434 485 aaPredicted RBP14.74□□□□□ -0.05
RNU4-89P-201ENST00000607443 ZNF692Q9BU19 519 aaPredicted RBP14.7□□□□□ -0.06
RNU4-89P-201ENST00000607443 SSUH2Q9Y2M2 353 aa14.68□□□□□ -0.06
RNU4-89P-201ENST00000607443 C19orf67A6NJJ6 358 aa14.66□□□□□ -0.06
RNU4-89P-201ENST00000607443 GABBR2O75899 941 aa14.55□□□□□ -0.08
RNU4-89P-201ENST00000607443 CHADLQ6NUI6 762 aa14.52□□□□□ -0.09
RNU4-89P-201ENST00000607443 PRR29P0C7W0 189 aa14.47□□□□□ -0.09
RNU4-89P-201ENST00000607443 PABPN1Q86U42 306 aaKnown RBP eCLIP14.46□□□□□ -0.09
RNU4-89P-201ENST00000607443 LHX8Q68G74 356 aa14.4□□□□□ -0.1
RNU4-89P-201ENST00000607443 FARP1Q9Y4F1 1045 aaPredicted RBP14.28□□□□□ -0.12
RNU4-89P-201ENST00000607443 CD44P16070 742 aaKnown RBP14.27□□□□□ -0.13
RNU4-89P-201ENST00000607443 POTEIP0CG38 1075 aa14.24□□□□□ -0.13
RNU4-89P-201ENST00000607443 CLCN6P51797 869 aa14.18□□□□□ -0.14
RNU4-89P-201ENST00000607443 DCBLD2Q96PD2 775 aa14.06□□□□□ -0.16
RNU4-89P-201ENST00000607443 ZNF579Q8NAF0 562 aaKnown RBP14.04□□□□□ -0.16
RNU4-89P-201ENST00000607443 CSRNP3Q8WYN3 585 aa14.02□□□□□ -0.17
RNU4-89P-201ENST00000607443 CREBZFQ9NS37 354 aa14.02□□□□□ -0.17
RNU4-89P-201ENST00000607443 ZRANB1Q9UGI0 708 aa14.02□□□□□ -0.17
RNU4-89P-201ENST00000607443 STAG3Q9UJ98 1225 aa13.98□□□□□ -0.17
RNU4-89P-201ENST00000607443 GALR2O43603 387 aaPredicted RBP13.9□□□□□ -0.18
RNU4-89P-201ENST00000607443 SPDYE4A6NLX3 237 aa13.83□□□□□ -0.2
RNU4-89P-201ENST00000607443 PAK3O75914 559 aaPredicted RBP13.8□□□□□ -0.2
RNU4-89P-201ENST00000607443 OTUD5Q96G74 571 aa13.79□□□□□ -0.2
RNU4-89P-201ENST00000607443 PHF12Q96QT6 1004 aa13.78□□□□□ -0.2
RNU4-89P-201ENST00000607443 PLSCR2Q9NRY7 297 aa13.78□□□□□ -0.2
RNU4-89P-201ENST00000607443 POTEB2H3BUK9 544 aa13.76□□□□□ -0.21
RNU4-89P-201ENST00000607443 NPM1P06748 294 aaKnown RBP eCLIP13.74□□□□□ -0.21
RNU4-89P-201ENST00000607443 MNX1P50219 401 aaPredicted RBP13.73□□□□□ -0.21
RNU4-89P-201ENST00000607443 PELP1Q8IZL8 1130 aaKnown RBP13.68□□□□□ -0.22
RNU4-89P-201ENST00000607443 ASTLQ6HA08 431 aaPredicted RBP13.59□□□□□ -0.23
RNU4-89P-201ENST00000607443 EHMT2Q96KQ7 1210 aa13.59□□□□□ -0.23
RNU4-89P-201ENST00000607443 MS4A3Q96HJ5 214 aa13.58□□□□□ -0.24
RNU4-89P-201ENST00000607443 POTEMA6NI47 508 aa13.57□□□□□ -0.24
RNU4-89P-201ENST00000607443 ATMINO43313 823 aaPredicted RBP13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms