Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
COL4A5P29400 MAP3K21-201ENST00000366622 4005 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
COL4A5P29400 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
COL4A5P29400 CCDC169-204ENST00000379864 5944 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
COL4A5P29400 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
COL4A5P29400 OR4F6-201ENST00000328882 1238 ntAPPRIS P1 BASIC4.38□□□□□ -1.71
COL4A5P29400 Y_RNA.500-201ENST00000384466 111 ntBASIC4.38□□□□□ -1.71
COL4A5P29400 VN1R51P-201ENST00000411675 945 ntBASIC4.38□□□□□ -1.71
COL4A5P29400 NPM1P25-201ENST00000429734 854 ntBASIC4.38□□□□□ -1.71
COL4A5P29400 AC067968.2-201ENST00000592583 566 ntTSL 4 BASIC4.38□□□□□ -1.71
COL4A5P29400 U4.6-201ENST00000621618 127 ntBASIC4.38□□□□□ -1.71
COL4A5P29400 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC4.38□□□□□ -1.71
COL4A5P29400 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
COL4A5P29400 FGD4-211ENST00000531134 2924 ntTSL 2 BASIC4.38□□□□□ -1.71
COL4A5P29400 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC4.38□□□□□ -1.71
COL4A5P29400 LINC01197-202ENST00000555332 3568 ntTSL 3 BASIC4.37□□□□□ -1.71
COL4A5P29400 RALGAPA1P1-201ENST00000443361 6232 ntBASIC4.37□□□□□ -1.71
COL4A5P29400 STEAP2-203ENST00000394622 6612 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
COL4A5P29400 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC4.37□□□□□ -1.71
COL4A5P29400 FLG2-201ENST00000388718 9124 ntAPPRIS P1 TSL 5 BASIC4.37□□□□□ -1.71
COL4A5P29400 SV2B-201ENST00000330276 11202 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
COL4A5P29400 AC007685.1-201ENST00000329806 452 ntBASIC4.37□□□□□ -1.71
COL4A5P29400 TTTY12-201ENST00000413466 979 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
COL4A5P29400 AC007349.1-201ENST00000419326 587 ntTSL 4 BASIC4.37□□□□□ -1.71
COL4A5P29400 AC087650.1-201ENST00000431445 468 ntBASIC4.37□□□□□ -1.71
COL4A5P29400 ARL4AP3-201ENST00000441452 574 ntBASIC4.37□□□□□ -1.71
COL4A5P29400 AC005008.1-201ENST00000456151 612 ntBASIC4.37□□□□□ -1.71
COL4A5P29400 RN7SL504P-201ENST00000494496 287 ntBASIC4.37□□□□□ -1.71
COL4A5P29400 AC138057.1-201ENST00000497258 696 ntTSL 3 BASIC4.37□□□□□ -1.71
COL4A5P29400 LINC01327-201ENST00000498413 535 ntTSL 3 BASIC4.37□□□□□ -1.71
COL4A5P29400 LINC02213-202ENST00000506021 774 ntTSL 2 BASIC4.37□□□□□ -1.71
COL4A5P29400 AC105180.1-201ENST00000523317 426 ntTSL 3 BASIC4.37□□□□□ -1.71
COL4A5P29400 OR5M7P-201ENST00000526140 972 ntBASIC4.37□□□□□ -1.71
COL4A5P29400 GLIPR1L1-204ENST00000548623 484 ntTSL 3 BASIC4.37□□□□□ -1.71
COL4A5P29400 AC006116.10-201ENST00000591836 581 ntBASIC4.37□□□□□ -1.71
COL4A5P29400 AC116312.1-201ENST00000606841 314 ntBASIC4.37□□□□□ -1.71
COL4A5P29400 CNTN5-212ENST00000619298 5734 ntTSL 5 BASIC4.37□□□□□ -1.71
COL4A5P29400 BDP1P-201ENST00000582658 1990 ntBASIC4.37□□□□□ -1.71
COL4A5P29400 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC4.37□□□□□ -1.71
COL4A5P29400 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
COL4A5P29400 UBE3AP2-201ENST00000429033 2259 ntBASIC4.36□□□□□ -1.71
COL4A5P29400 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC4.36□□□□□ -1.71
COL4A5P29400 AL353743.1-202ENST00000431724 1695 ntBASIC4.36□□□□□ -1.71
COL4A5P29400 MTCO1P46-201ENST00000451639 1491 ntBASIC4.36□□□□□ -1.71
COL4A5P29400 PCDH15-217ENST00000414778 9234 ntAPPRIS ALT2 TSL 5 BASIC4.36□□□□□ -1.71
COL4A5P29400 PCDH15-227ENST00000614895 9249 ntAPPRIS ALT2 TSL 5 BASIC4.36□□□□□ -1.71
COL4A5P29400 AC097717.1-228ENST00000417006 754 ntTSL 3 BASIC4.36□□□□□ -1.71
COL4A5P29400 AL034347.1-201ENST00000420766 835 ntTSL 3 BASIC4.36□□□□□ -1.71
COL4A5P29400 AL589740.1-201ENST00000457513 756 ntTSL 3 BASIC4.36□□□□□ -1.71
COL4A5P29400 AC096554.1-201ENST00000458182 529 ntTSL 5 BASIC4.36□□□□□ -1.71
COL4A5P29400 RPL32P34-201ENST00000486380 400 ntBASIC4.36□□□□□ -1.71
COL4A5P29400 HDAC2-AS2-209ENST00000519270 1244 ntTSL 4 BASIC4.36□□□□□ -1.71
COL4A5P29400 AP000786.1-201ENST00000541092 581 ntTSL 4 BASIC4.36□□□□□ -1.71
COL4A5P29400 AC090403.1-205ENST00000580883 516 ntTSL 2 BASIC4.36□□□□□ -1.71
COL4A5P29400 AP005120.1-202ENST00000584321 506 ntTSL 4 BASIC4.36□□□□□ -1.71
COL4A5P29400 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC4.36□□□□□ -1.71
COL4A5P29400 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC4.36□□□□□ -1.71
COL4A5P29400 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
COL4A5P29400 KCTD16-201ENST00000507359 13950 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
COL4A5P29400 BRCA1-203ENST00000357654 7094 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
COL4A5P29400 CENPE-208ENST00000611174 8260 ntTSL 5 BASIC4.36□□□□□ -1.71
COL4A5P29400 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
COL4A5P29400 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC4.36□□□□□ -1.71
COL4A5P29400 XRN1-201ENST00000264951 10143 ntAPPRIS P3 TSL 1 (best) BASIC4.36□□□□□ -1.71
COL4A5P29400 NEK11-207ENST00000508196 1938 ntAPPRIS P3 TSL 2 BASIC4.36□□□□□ -1.71
COL4A5P29400 RPGRIP1L-201ENST00000262135 8195 ntAPPRIS P3 TSL 5 BASIC4.36□□□□□ -1.71
COL4A5P29400 AP002512.4-201ENST00000641310 4672 ntAPPRIS P1 BASIC4.36□□□□□ -1.71
COL4A5P29400 GABRG1-201ENST00000295452 6785 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
COL4A5P29400 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
COL4A5P29400 AL034403.1-201ENST00000399414 885 ntBASIC4.35□□□□□ -1.71
COL4A5P29400 AJ239321.1-201ENST00000424255 564 ntBASIC4.35□□□□□ -1.71
COL4A5P29400 KCTD9P3-201ENST00000434597 1169 ntBASIC4.35□□□□□ -1.71
COL4A5P29400 RSL24D1P3-201ENST00000449255 495 ntBASIC4.35□□□□□ -1.71
COL4A5P29400 CREM-228ENST00000473940 1182 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
COL4A5P29400 FTH1P9-201ENST00000513251 355 ntBASIC4.35□□□□□ -1.71
COL4A5P29400 GYPA-211ENST00000535709 695 ntAPPRIS ALT2 TSL 1 (best) BASIC4.35□□□□□ -1.71
COL4A5P29400 LINC00519-201ENST00000557518 682 ntTSL 2 BASIC4.35□□□□□ -1.71
COL4A5P29400 AC005692.2-201ENST00000566521 596 ntTSL 3 BASIC4.35□□□□□ -1.71
COL4A5P29400 CYP4A43P-201ENST00000568156 121 ntBASIC4.35□□□□□ -1.71
COL4A5P29400 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC4.35□□□□□ -1.71
COL4A5P29400 LINC01630-204ENST00000582689 539 ntTSL 4 BASIC4.35□□□□□ -1.71
COL4A5P29400 AC135507.2-201ENST00000612443 309 ntBASIC4.35□□□□□ -1.71
COL4A5P29400 SCARNA15.3-201ENST00000626315 122 ntBASIC4.35□□□□□ -1.71
COL4A5P29400 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC4.35□□□□□ -1.71
COL4A5P29400 SCARNA4.1-201ENST00000628597 123 ntBASIC4.35□□□□□ -1.71
COL4A5P29400 MAP3K19-203ENST00000375845 4369 ntAPPRIS P3 TSL 1 (best) BASIC4.35□□□□□ -1.71
COL4A5P29400 LINC01109-201ENST00000603837 3081 ntBASIC4.35□□□□□ -1.71
COL4A5P29400 PTPN13-209ENST00000511467 8076 ntAPPRIS P4 TSL 2 BASIC4.35□□□□□ -1.71
COL4A5P29400 CD84-208ENST00000534968 7885 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
COL4A5P29400 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
COL4A5P29400 ATRX-202ENST00000395603 10218 ntAPPRIS ALT2 TSL 1 (best) BASIC4.35□□□□□ -1.71
COL4A5P29400 SLC24A2-202ENST00000341998 10749 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
COL4A5P29400 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
COL4A5P29400 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
COL4A5P29400 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC4.35□□□□□ -1.71
COL4A5P29400 ABCB5-202ENST00000404938 5811 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
COL4A5P29400 CLCA3P-202ENST00000466454 3412 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
COL4A5P29400 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
COL4A5P29400 OR2AP1-201ENST00000321688 930 ntAPPRIS P1 BASIC4.35□□□□□ -1.71
COL4A5P29400 RNA5SP432-201ENST00000362480 116 ntBASIC4.35□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 91.8 ms