RNA–Protein interactions for RNA: ENST00000603837.1

LINC01109-201, Transcript of long intergenic non-protein coding RNA 1109, humanhuman

BASIC

Gene LINC01109, Length 3,081 nt, Biotype lincRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01109-201ENST00000603837 AEBP2Q6ZN18 517 aaPredicted RBP13.79□□□□□ -0.2
LINC01109-201ENST00000603837 CHIC1Q5VXU3 224 aa13.5□□□□□ -0.25
LINC01109-201ENST00000603837 PHF23Q9BUL5 403 aaPredicted RBP11.88□□□□□ -0.51
LINC01109-201ENST00000603837 SENP3Q9H4L4 574 aaPredicted RBP11.71□□□□□ -0.53
LINC01109-201ENST00000603837 PLPPR3Q6T4P5 718 aa11□□□□□ -0.65
LINC01109-201ENST00000603837 FOXD1Q16676 465 aa10.86□□□□□ -0.67
LINC01109-201ENST00000603837 PPP6R1Q9UPN7 881 aa10.48□□□□□ -0.73
LINC01109-201ENST00000603837 ADRA2BP18089 450 aa10.48□□□□□ -0.73
LINC01109-201ENST00000603837 PIAS4Q8N2W9 510 aaPredicted RBP10.27□□□□□ -0.77
LINC01109-201ENST00000603837 MSH5O43196 834 aa10.01□□□□□ -0.81
LINC01109-201ENST00000603837 PPP4R3CPQ6ZMV5 832 aa9.69□□□□□ -0.86
LINC01109-201ENST00000603837 SCAF1Q9H7N4 1312 aaKnown RBP9.6□□□□□ -0.87
LINC01109-201ENST00000603837 KCNA4P22459 653 aa9.5□□□□□ -0.89
LINC01109-201ENST00000603837 MAPK8IP2Q13387 824 aaPredicted RBP9.5□□□□□ -0.89
LINC01109-201ENST00000603837 NCBP3Q53F19 620 aaKnown RBP9.45□□□□□ -0.9
LINC01109-201ENST00000603837 CNKSR2Q8WXI2 1034 aa9.41□□□□□ -0.9
LINC01109-201ENST00000603837 DMRT2Q9Y5R5 561 aa9.34□□□□□ -0.91
LINC01109-201ENST00000603837 NPM3O75607 178 aaKnown RBP9.3□□□□□ -0.92
LINC01109-201ENST00000603837 SLC24A1O60721 1099 aa9.23□□□□□ -0.93
LINC01109-201ENST00000603837 RNF216Q9NWF9 866 aaPredicted RBP9.21□□□□□ -0.93
LINC01109-201ENST00000603837 HOXD11P31277 338 aaPredicted RBP9.16□□□□□ -0.94
LINC01109-201ENST00000603837 POTEDQ86YR6 584 aa9.06□□□□□ -0.96
LINC01109-201ENST00000603837 SLC4A1APQ9BWU0 796 aaKnown RBP9.06□□□□□ -0.96
LINC01109-201ENST00000603837 DNAJC5BQ9UF47 199 aa8.99□□□□□ -0.97
LINC01109-201ENST00000603837 DCAF8L1A6NGE4 600 aa8.99□□□□□ -0.97
LINC01109-201ENST00000603837 EHMT2Q96KQ7 1210 aa8.86□□□□□ -0.99
LINC01109-201ENST00000603837 SLC4A2P04920 1241 aa8.77□□□□□ -1.01
LINC01109-201ENST00000603837 GRWD1Q9BQ67 446 aaKnown RBP eCLIP8.76□□□□□ -1.01
LINC01109-201ENST00000603837 FOXD4L1Q9NU39 408 aa8.73□□□□□ -1.01
LINC01109-201ENST00000603837 ZBTB22O15209 634 aa8.73□□□□□ -1.01
LINC01109-201ENST00000603837 CSRNP3Q8WYN3 585 aa8.72□□□□□ -1.01
LINC01109-201ENST00000603837 U3KPZ7 1027 aaPredicted RBP8.6□□□□□ -1.03
LINC01109-201ENST00000603837 MYCNP04198 464 aaPredicted RBP8.6□□□□□ -1.03
LINC01109-201ENST00000603837 RNF39Q9H2S5 420 aa8.57□□□□□ -1.04
LINC01109-201ENST00000603837 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.52□□□□□ -1.05
LINC01109-201ENST00000603837 HNRNPUL2Q1KMD3 747 aaKnown RBP8.52□□□□□ -1.05
LINC01109-201ENST00000603837 C1QBPQ07021 282 aaKnown RBP8.48□□□□□ -1.05
LINC01109-201ENST00000603837 SAMD1Q6SPF0 538 aaPredicted RBP8.48□□□□□ -1.05
LINC01109-201ENST00000603837 PRKCSHP14314 528 aaPredicted RBP8.48□□□□□ -1.05
LINC01109-201ENST00000603837 APLP2Q06481 763 aa8.42□□□□□ -1.06
LINC01109-201ENST00000603837 ATXN8OSP0DMR3 200 aa8.41□□□□□ -1.06
LINC01109-201ENST00000603837 DAXXQ9UER7 740 aaPredicted RBP8.38□□□□□ -1.07
LINC01109-201ENST00000603837 SPINK5Q9NQ38 1064 aaPredicted RBP8.36□□□□□ -1.07
LINC01109-201ENST00000603837 ATF5Q9Y2D1 282 aaPredicted RBP8.36□□□□□ -1.07
LINC01109-201ENST00000603837 CACNB1Q02641 598 aaPredicted RBP8.35□□□□□ -1.07
LINC01109-201ENST00000603837 CAPN15O75808 1086 aa8.34□□□□□ -1.07
LINC01109-201ENST00000603837 PELP1Q8IZL8 1130 aaKnown RBP8.33□□□□□ -1.08
LINC01109-201ENST00000603837 TRHP20396 242 aaPredicted RBP8.31□□□□□ -1.08
LINC01109-201ENST00000603837 ZNF219Q9P2Y4 722 aaPredicted RBP8.3□□□□□ -1.08
LINC01109-201ENST00000603837 RTN4Q9NQC3 1192 aaKnown RBP8.29□□□□□ -1.08
LINC01109-201ENST00000603837 MYT1Q01538 1121 aa8.23□□□□□ -1.09
LINC01109-201ENST00000603837 NISCHQ9Y2I1 1504 aa8.23□□□□□ -1.09
LINC01109-201ENST00000603837 ABCB7O75027 752 aa8.18□□□□□ -1.1
LINC01109-201ENST00000603837 POLA2Q14181 598 aa8.18□□□□□ -1.1
LINC01109-201ENST00000603837 DSG3P32926 999 aa8.17□□□□□ -1.1
LINC01109-201ENST00000603837 ERICH6Q7L0X2 663 aa8.12□□□□□ -1.11
LINC01109-201ENST00000603837 TTBK1Q5TCY1 1321 aaPredicted RBP8.12□□□□□ -1.11
LINC01109-201ENST00000603837 ZBTB12Q9Y330 459 aaPredicted RBP8.03□□□□□ -1.12
LINC01109-201ENST00000603837 FBLN2P98095 1184 aa8.02□□□□□ -1.13
LINC01109-201ENST00000603837 MKRN4PQ13434 485 aaPredicted RBP7.99□□□□□ -1.13
LINC01109-201ENST00000603837 TIMELESSQ9UNS1 1208 aa7.97□□□□□ -1.13
LINC01109-201ENST00000603837 OSCARQ8IYS5 282 aa7.89□□□□□ -1.15
LINC01109-201ENST00000603837 FKBP8Q14318 412 aa7.89□□□□□ -1.15
LINC01109-201ENST00000603837 EIF5BO60841 1220 aaKnown RBP7.87□□□□□ -1.15
LINC01109-201ENST00000603837 KLHL34Q8N239 644 aa7.87□□□□□ -1.15
LINC01109-201ENST00000603837 SPDYE4A6NLX3 237 aa7.85□□□□□ -1.15
LINC01109-201ENST00000603837 PLEKHG5O94827 1062 aa7.85□□□□□ -1.15
LINC01109-201ENST00000603837 TULP1O00294 542 aaPredicted RBP7.83□□□□□ -1.16
LINC01109-201ENST00000603837 SPDYE2BA6NHP3 402 aa7.82□□□□□ -1.16
LINC01109-201ENST00000603837 SPDYE6P0CI01 402 aa7.82□□□□□ -1.16
LINC01109-201ENST00000603837 SPDYE2Q495Y8 402 aa7.82□□□□□ -1.16
LINC01109-201ENST00000603837 ZNF692Q9BU19 519 aaPredicted RBP7.81□□□□□ -1.16
LINC01109-201ENST00000603837 CCDC180Q9P1Z9 1646 aa7.81□□□□□ -1.16
LINC01109-201ENST00000603837 RBM42Q9BTD8 480 aaKnown RBP7.8□□□□□ -1.16
LINC01109-201ENST00000603837 AMER1Q5JTC6 1135 aaPredicted RBP7.76□□□□□ -1.17
LINC01109-201ENST00000603837 SSUH2Q9Y2M2 353 aa7.75□□□□□ -1.17
LINC01109-201ENST00000603837 ARXQ96QS3 562 aa7.75□□□□□ -1.17
LINC01109-201ENST00000603837 HRCP23327 699 aa7.71□□□□□ -1.17
LINC01109-201ENST00000603837 PABPN1Q86U42 306 aaKnown RBP eCLIP7.7□□□□□ -1.18
LINC01109-201ENST00000603837 AKT1S1Q96B36 256 aa7.7□□□□□ -1.18
LINC01109-201ENST00000603837 RANGAP1P46060 587 aaPredicted RBP7.69□□□□□ -1.18
LINC01109-201ENST00000603837 PROM2Q8N271 834 aa7.69□□□□□ -1.18
LINC01109-201ENST00000603837 PODXL2Q9NZ53 605 aa7.67□□□□□ -1.18
LINC01109-201ENST00000603837 BCL11AQ9H165 835 aa7.64□□□□□ -1.19
LINC01109-201ENST00000603837 TAOK2Q9UL54 1235 aa7.64□□□□□ -1.19
LINC01109-201ENST00000603837 REM2Q8IYK8 340 aaPredicted RBP7.63□□□□□ -1.19
LINC01109-201ENST00000603837 FBXO3Q9UK99 471 aa7.6□□□□□ -1.19
LINC01109-201ENST00000603837 TPRNQ4KMQ1 711 aa7.6□□□□□ -1.19
LINC01109-201ENST00000603837 SPDYE1Q8NFV5 336 aaPredicted RBP7.58□□□□□ -1.2
LINC01109-201ENST00000603837 STAG3Q9UJ98 1225 aa7.58□□□□□ -1.2
LINC01109-201ENST00000603837 CLEC11AQ9Y240 323 aa7.58□□□□□ -1.2
LINC01109-201ENST00000603837 HOMEZQ8IX15 550 aa7.56□□□□□ -1.2
LINC01109-201ENST00000603837 PITPNM1O00562 1244 aa7.54□□□□□ -1.2
LINC01109-201ENST00000603837 FAM9AQ8IZU1 332 aaPredicted RBP7.52□□□□□ -1.21
LINC01109-201ENST00000603837 PRR29P0C7W0 189 aa7.5□□□□□ -1.21
LINC01109-201ENST00000603837 VASPP50552 380 aaPredicted RBP7.49□□□□□ -1.21
LINC01109-201ENST00000603837 PPARGC1BQ86YN6 1023 aaKnown RBP7.49□□□□□ -1.21
LINC01109-201ENST00000603837 CHRDL2Q6WN34 429 aa7.46□□□□□ -1.21
LINC01109-201ENST00000603837 MIER1Q8N108 512 aa7.46□□□□□ -1.22
LINC01109-201ENST00000603837 PLCD3Q8N3E9 789 aa7.45□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms