Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 ATP5J2P6-201ENST00000565203 266 ntBASIC4.72□□□□□ -1.65
TCRBV7S3A2A0A539 BPTFP1-201ENST00000579209 492 ntBASIC4.72□□□□□ -1.65
TCRBV7S3A2A0A539 AC087399.1-201ENST00000579769 573 ntTSL 4 BASIC4.72□□□□□ -1.65
TCRBV7S3A2A0A539 AC067968.2-201ENST00000592583 566 ntTSL 4 BASIC4.72□□□□□ -1.65
TCRBV7S3A2A0A539 AC092316.1-201ENST00000598703 297 ntTSL 5 BASIC4.72□□□□□ -1.65
TCRBV7S3A2A0A539 AL353778.1-201ENST00000603149 408 ntBASIC4.72□□□□□ -1.65
TCRBV7S3A2A0A539 AL589740.1-208ENST00000606913 812 ntTSL 5 BASIC4.72□□□□□ -1.65
TCRBV7S3A2A0A539 C7orf77-201ENST00000616258 548 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
TCRBV7S3A2A0A539 OR11H4-202ENST00000641082 1585 ntAPPRIS P1 BASIC4.72□□□□□ -1.65
TCRBV7S3A2A0A539 EFCAB5-201ENST00000394835 5132 ntAPPRIS P2 TSL 1 (best) BASIC4.72□□□□□ -1.65
TCRBV7S3A2A0A539 AC011900.1-201ENST00000446838 2999 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
TCRBV7S3A2A0A539 NKRF-202ENST00000371527 3741 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
TCRBV7S3A2A0A539 AC135352.1-201ENST00000506173 1418 ntBASIC4.72□□□□□ -1.65
TCRBV7S3A2A0A539 TNRC6B-206ENST00000454349 18279 ntAPPRIS ALT2 TSL 2 BASIC4.71□□□□□ -1.65
TCRBV7S3A2A0A539 FANCD2-202ENST00000383807 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC4.71□□□□□ -1.65
TCRBV7S3A2A0A539 CYP7A1-201ENST00000301645 2950 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.65
TCRBV7S3A2A0A539 ZFRP1-201ENST00000457579 2970 ntBASIC4.71□□□□□ -1.65
TCRBV7S3A2A0A539 TMEM154-201ENST00000304385 10698 ntAPPRIS P2 TSL 1 (best) BASIC4.71□□□□□ -1.65
TCRBV7S3A2A0A539 SLC13A1-201ENST00000194130 3815 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.65
TCRBV7S3A2A0A539 IQGAP2-204ENST00000502745 3404 ntTSL 2 BASIC4.71□□□□□ -1.65
TCRBV7S3A2A0A539 TRIM36-209ENST00000514154 1952 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
TCRBV7S3A2A0A539 RBMS3-205ENST00000434693 8540 ntTSL 5 BASIC4.71□□□□□ -1.66
TCRBV7S3A2A0A539 PRG4-206ENST00000635041 4915 ntAPPRIS ALT2 TSL 5 BASIC4.71□□□□□ -1.66
TCRBV7S3A2A0A539 GAS2L3-202ENST00000537247 2742 ntTSL 2 BASIC4.71□□□□□ -1.66
TCRBV7S3A2A0A539 INPP4B-215ENST00000509777 4334 ntTSL 5 BASIC4.71□□□□□ -1.66
TCRBV7S3A2A0A539 HIST1H2BD-201ENST00000289316 789 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
TCRBV7S3A2A0A539 OR5H2-201ENST00000355273 945 ntBASIC4.71□□□□□ -1.66
TCRBV7S3A2A0A539 OR5H2-202ENST00000356526 930 ntAPPRIS P1 BASIC4.71□□□□□ -1.66
TCRBV7S3A2A0A539 SNORD116-2-201ENST00000384274 95 ntBASIC4.71□□□□□ -1.66
TCRBV7S3A2A0A539 Y_RNA.465-201ENST00000384293 102 ntBASIC4.71□□□□□ -1.66
TCRBV7S3A2A0A539 SNORD116-6-201ENST00000384711 96 ntBASIC4.71□□□□□ -1.66
TCRBV7S3A2A0A539 SFR1P1-201ENST00000403720 688 ntBASIC4.71□□□□□ -1.66
TCRBV7S3A2A0A539 MTND4P22-201ENST00000413116 1169 ntBASIC4.71□□□□□ -1.66
TCRBV7S3A2A0A539 OR51A3P-201ENST00000413596 924 ntBASIC4.71□□□□□ -1.66
TCRBV7S3A2A0A539 AC093158.1-201ENST00000415549 791 ntTSL 3 BASIC4.71□□□□□ -1.66
TCRBV7S3A2A0A539 TRGV6-201ENST00000417928 299 ntBASIC4.71□□□□□ -1.66
TCRBV7S3A2A0A539 LINC01676-201ENST00000420901 410 ntTSL 3 BASIC4.71□□□□□ -1.66
TCRBV7S3A2A0A539 AC007435.1-201ENST00000421086 415 ntBASIC4.71□□□□□ -1.66
TCRBV7S3A2A0A539 BLOC1S2P1-201ENST00000428431 301 ntBASIC4.71□□□□□ -1.66
TCRBV7S3A2A0A539 AC007559.1-201ENST00000428736 355 ntBASIC4.71□□□□□ -1.66
TCRBV7S3A2A0A539 AL133268.3-201ENST00000428903 577 ntTSL 5 BASIC4.71□□□□□ -1.66
TCRBV7S3A2A0A539 RPL21P91-201ENST00000429231 479 ntBASIC4.71□□□□□ -1.66
TCRBV7S3A2A0A539 LINC01935-201ENST00000431897 437 ntTSL 3 BASIC4.71□□□□□ -1.66
TCRBV7S3A2A0A539 AC009299.3-203ENST00000435692 1096 ntTSL 5 BASIC4.71□□□□□ -1.66
TCRBV7S3A2A0A539 UBE2V1P5-201ENST00000440070 405 ntBASIC4.71□□□□□ -1.66
TCRBV7S3A2A0A539 HMGB1P48-201ENST00000446155 598 ntBASIC4.71□□□□□ -1.66
TCRBV7S3A2A0A539 HMGB1P16-201ENST00000447155 540 ntBASIC4.71□□□□□ -1.66
TCRBV7S3A2A0A539 NECAP1P2-201ENST00000455668 727 ntBASIC4.71□□□□□ -1.66
TCRBV7S3A2A0A539 AL122001.1-201ENST00000457027 370 ntBASIC4.71□□□□□ -1.66
TCRBV7S3A2A0A539 AC025164.1-201ENST00000496249 478 ntBASIC4.71□□□□□ -1.66
TCRBV7S3A2A0A539 AC112204.2-201ENST00000503269 374 ntTSL 2 BASIC4.71□□□□□ -1.66
TCRBV7S3A2A0A539 IGBP1P5-201ENST00000507524 1000 ntBASIC4.71□□□□□ -1.66
TCRBV7S3A2A0A539 AC104119.1-201ENST00000508829 339 ntTSL 5 BASIC4.71□□□□□ -1.66
TCRBV7S3A2A0A539 AC021146.3-201ENST00000511911 260 ntBASIC4.71□□□□□ -1.66
TCRBV7S3A2A0A539 AC093755.1-201ENST00000512950 1023 ntBASIC4.71□□□□□ -1.66
TCRBV7S3A2A0A539 AC118465.1-201ENST00000513820 1271 ntBASIC4.71□□□□□ -1.66
TCRBV7S3A2A0A539 AP000926.4-201ENST00000527351 454 ntBASIC4.71□□□□□ -1.66
TCRBV7S3A2A0A539 AP001317.1-201ENST00000531194 960 ntBASIC4.71□□□□□ -1.66
TCRBV7S3A2A0A539 PDCL2P2-201ENST00000533651 189 ntBASIC4.71□□□□□ -1.66
TCRBV7S3A2A0A539 ERP27-202ENST00000540097 993 ntTSL 2 BASIC4.71□□□□□ -1.66
TCRBV7S3A2A0A539 AC004801.3-201ENST00000547602 962 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
TCRBV7S3A2A0A539 AL356804.1-201ENST00000553791 448 ntTSL 5 BASIC4.71□□□□□ -1.66
TCRBV7S3A2A0A539 LINC00871-201ENST00000555246 408 ntTSL 5 BASIC4.71□□□□□ -1.66
TCRBV7S3A2A0A539 RPL21P7-201ENST00000557463 483 ntBASIC4.71□□□□□ -1.66
TCRBV7S3A2A0A539 AC021351.1-201ENST00000560886 652 ntTSL 5 BASIC4.71□□□□□ -1.66
TCRBV7S3A2A0A539 AC127502.1-204ENST00000564861 618 ntTSL 3 BASIC4.71□□□□□ -1.66
TCRBV7S3A2A0A539 RN7SL652P-201ENST00000577769 300 ntBASIC4.71□□□□□ -1.66
TCRBV7S3A2A0A539 AC002091.1-201ENST00000578788 557 ntTSL 2 BASIC4.71□□□□□ -1.66
TCRBV7S3A2A0A539 AC069545.1-201ENST00000605671 358 ntBASIC4.71□□□□□ -1.66
TCRBV7S3A2A0A539 AL021707.7-201ENST00000607991 416 ntBASIC4.71□□□□□ -1.66
TCRBV7S3A2A0A539 AP004247.3-201ENST00000608682 624 ntBASIC4.71□□□□□ -1.66
TCRBV7S3A2A0A539 AL360219.1-201ENST00000610230 366 ntBASIC4.71□□□□□ -1.66
TCRBV7S3A2A0A539 AC006840.1-201ENST00000623069 542 ntBASIC4.71□□□□□ -1.66
TCRBV7S3A2A0A539 CENPE-202ENST00000380026 8241 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
TCRBV7S3A2A0A539 AC022031.1-201ENST00000585985 2593 ntBASIC4.71□□□□□ -1.66
TCRBV7S3A2A0A539 PLS3-209ENST00000539310 3037 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
TCRBV7S3A2A0A539 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
TCRBV7S3A2A0A539 SLC26A5-207ENST00000393729 2422 ntTSL 5 BASIC4.71□□□□□ -1.66
TCRBV7S3A2A0A539 WDR72-202ENST00000396328 7507 ntAPPRIS P2 TSL 1 (best) BASIC4.71□□□□□ -1.66
TCRBV7S3A2A0A539 ALS2CR12-201ENST00000286190 1769 ntAPPRIS P3 TSL 1 (best) BASIC4.7□□□□□ -1.66
TCRBV7S3A2A0A539 CLVS1-201ENST00000325897 3486 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
TCRBV7S3A2A0A539 DLC1-209ENST00000511869 2451 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
TCRBV7S3A2A0A539 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC4.7□□□□□ -1.66
TCRBV7S3A2A0A539 PMCHL1-201ENST00000418902 1917 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
TCRBV7S3A2A0A539 HYDIN-201ENST00000288168 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC4.7□□□□□ -1.66
TCRBV7S3A2A0A539 SAMSN1-201ENST00000285670 2185 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
TCRBV7S3A2A0A539 OR5W2-201ENST00000344514 933 ntAPPRIS P1 BASIC4.7□□□□□ -1.66
TCRBV7S3A2A0A539 RNA5SP507-201ENST00000363603 121 ntBASIC4.7□□□□□ -1.66
TCRBV7S3A2A0A539 SNORA51.12-201ENST00000384448 134 ntBASIC4.7□□□□□ -1.66
TCRBV7S3A2A0A539 AF130351.1-202ENST00000400562 808 ntAPPRIS P5 TSL 3 BASIC4.7□□□□□ -1.66
TCRBV7S3A2A0A539 RPL23AP27-201ENST00000415161 451 ntBASIC4.7□□□□□ -1.66
TCRBV7S3A2A0A539 DPH5-204ENST00000427040 609 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
TCRBV7S3A2A0A539 DYNLL1P7-201ENST00000429273 258 ntBASIC4.7□□□□□ -1.66
TCRBV7S3A2A0A539 MTCO1P54-201ENST00000430139 712 ntBASIC4.7□□□□□ -1.66
TCRBV7S3A2A0A539 RPL7P4-203ENST00000430239 730 ntBASIC4.7□□□□□ -1.66
TCRBV7S3A2A0A539 LINC01889-201ENST00000430692 668 ntTSL 5 BASIC4.7□□□□□ -1.66
TCRBV7S3A2A0A539 LINC01680-201ENST00000434983 299 ntTSL 2 BASIC4.7□□□□□ -1.66
TCRBV7S3A2A0A539 AC073143.1-201ENST00000436316 395 ntBASIC4.7□□□□□ -1.66
TCRBV7S3A2A0A539 LIX1L-AS1-205ENST00000437797 536 ntTSL 3 BASIC4.7□□□□□ -1.66
TCRBV7S3A2A0A539 AP000770.1-201ENST00000444123 583 ntTSL 5 BASIC4.7□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 159.9 ms