RNA–Protein interactions for RNA: ENST00000447155.1

HMGB1P16-201, Transcript of high mobility group box 1 pseudogene 16, humanhuman

BASIC

Gene HMGB1P16, Length 540 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P16-201ENST00000447155 AEBP2Q6ZN18 517 aaPredicted RBP19.68■□□□□ 0.74
HMGB1P16-201ENST00000447155 CHIC1Q5VXU3 224 aa19.6■□□□□ 0.73
HMGB1P16-201ENST00000447155 PHF23Q9BUL5 403 aaPredicted RBP17.24■□□□□ 0.35
HMGB1P16-201ENST00000447155 SENP3Q9H4L4 574 aaPredicted RBP16.69■□□□□ 0.26
HMGB1P16-201ENST00000447155 PLPPR3Q6T4P5 718 aa16.08■□□□□ 0.16
HMGB1P16-201ENST00000447155 FOXD1Q16676 465 aa15.41■□□□□ 0.06
HMGB1P16-201ENST00000447155 ADRA2BP18089 450 aa15.1■□□□□ 0.01
HMGB1P16-201ENST00000447155 PPP6R1Q9UPN7 881 aa15.09■□□□□ 0.01
HMGB1P16-201ENST00000447155 PIAS4Q8N2W9 510 aaPredicted RBP14.62□□□□□ -0.07
HMGB1P16-201ENST00000447155 KCNA4P22459 653 aa14.25□□□□□ -0.13
HMGB1P16-201ENST00000447155 PPP4R3CPQ6ZMV5 832 aa14.21□□□□□ -0.13
HMGB1P16-201ENST00000447155 MSH5O43196 834 aa14.1□□□□□ -0.15
HMGB1P16-201ENST00000447155 NCBP3Q53F19 620 aaKnown RBP13.96□□□□□ -0.17
HMGB1P16-201ENST00000447155 SCAF1Q9H7N4 1312 aaKnown RBP13.87□□□□□ -0.19
HMGB1P16-201ENST00000447155 CNKSR2Q8WXI2 1034 aa13.74□□□□□ -0.21
HMGB1P16-201ENST00000447155 NPM3O75607 178 aaKnown RBP13.72□□□□□ -0.21
HMGB1P16-201ENST00000447155 SLC4A1APQ9BWU0 796 aaKnown RBP13.66□□□□□ -0.22
HMGB1P16-201ENST00000447155 EHMT2Q96KQ7 1210 aa13.65□□□□□ -0.22
HMGB1P16-201ENST00000447155 MAPK8IP2Q13387 824 aaPredicted RBP13.59□□□□□ -0.23
HMGB1P16-201ENST00000447155 RNF216Q9NWF9 866 aaPredicted RBP13.38□□□□□ -0.27
HMGB1P16-201ENST00000447155 POTEDQ86YR6 584 aa13.37□□□□□ -0.27
HMGB1P16-201ENST00000447155 DMRT2Q9Y5R5 561 aa13.37□□□□□ -0.27
HMGB1P16-201ENST00000447155 CSRNP3Q8WYN3 585 aa13.35□□□□□ -0.27
HMGB1P16-201ENST00000447155 DNAJC5BQ9UF47 199 aa13.32□□□□□ -0.28
HMGB1P16-201ENST00000447155 HOXD11P31277 338 aaPredicted RBP13.24□□□□□ -0.29
HMGB1P16-201ENST00000447155 ZBTB22O15209 634 aa13.12□□□□□ -0.31
HMGB1P16-201ENST00000447155 FOXD4L1Q9NU39 408 aa13.05□□□□□ -0.32
HMGB1P16-201ENST00000447155 SLC4A2P04920 1241 aa12.86□□□□□ -0.35
HMGB1P16-201ENST00000447155 DCAF8L1A6NGE4 600 aa12.75□□□□□ -0.37
HMGB1P16-201ENST00000447155 MYCNP04198 464 aaPredicted RBP12.7□□□□□ -0.38
HMGB1P16-201ENST00000447155 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.61□□□□□ -0.39
HMGB1P16-201ENST00000447155 ATXN8OSP0DMR3 200 aa12.58□□□□□ -0.4
HMGB1P16-201ENST00000447155 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.44□□□□□ -0.42
HMGB1P16-201ENST00000447155 HNRNPUL2Q1KMD3 747 aaKnown RBP12.44□□□□□ -0.42
HMGB1P16-201ENST00000447155 U3KPZ7 1027 aaPredicted RBP12.43□□□□□ -0.42
HMGB1P16-201ENST00000447155 SAMD1Q6SPF0 538 aaPredicted RBP12.4□□□□□ -0.42
HMGB1P16-201ENST00000447155 ATF5Q9Y2D1 282 aaPredicted RBP12.28□□□□□ -0.44
HMGB1P16-201ENST00000447155 APLP2Q06481 763 aa12.24□□□□□ -0.45
HMGB1P16-201ENST00000447155 RNF39Q9H2S5 420 aa12.1□□□□□ -0.47
HMGB1P16-201ENST00000447155 ZNF219Q9P2Y4 722 aaPredicted RBP12.09□□□□□ -0.47
HMGB1P16-201ENST00000447155 FKBP8Q14318 412 aa12.04□□□□□ -0.48
HMGB1P16-201ENST00000447155 C1QBPQ07021 282 aaKnown RBP12□□□□□ -0.49
HMGB1P16-201ENST00000447155 SPINK5Q9NQ38 1064 aaPredicted RBP11.97□□□□□ -0.49
HMGB1P16-201ENST00000447155 TRHP20396 242 aaPredicted RBP11.94□□□□□ -0.5
HMGB1P16-201ENST00000447155 CAPN15O75808 1086 aa11.91□□□□□ -0.5
HMGB1P16-201ENST00000447155 POLA2Q14181 598 aa11.82□□□□□ -0.52
HMGB1P16-201ENST00000447155 FBLN2P98095 1184 aa11.8□□□□□ -0.52
HMGB1P16-201ENST00000447155 MKRN4PQ13434 485 aaPredicted RBP11.78□□□□□ -0.52
HMGB1P16-201ENST00000447155 ZBTB12Q9Y330 459 aaPredicted RBP11.71□□□□□ -0.53
HMGB1P16-201ENST00000447155 SPDYE4A6NLX3 237 aa11.7□□□□□ -0.54
HMGB1P16-201ENST00000447155 ABCB7O75027 752 aa11.7□□□□□ -0.54
HMGB1P16-201ENST00000447155 DSG3P32926 999 aa11.63□□□□□ -0.55
HMGB1P16-201ENST00000447155 AMER1Q5JTC6 1135 aaPredicted RBP11.63□□□□□ -0.55
HMGB1P16-201ENST00000447155 PROM2Q8N271 834 aa11.58□□□□□ -0.56
HMGB1P16-201ENST00000447155 RTN4Q9NQC3 1192 aaKnown RBP11.56□□□□□ -0.56
HMGB1P16-201ENST00000447155 FBXO3Q9UK99 471 aa11.56□□□□□ -0.56
HMGB1P16-201ENST00000447155 CACNB1Q02641 598 aaPredicted RBP11.53□□□□□ -0.56
HMGB1P16-201ENST00000447155 SPDYE2BA6NHP3 402 aa11.41□□□□□ -0.58
HMGB1P16-201ENST00000447155 SPDYE6P0CI01 402 aa11.41□□□□□ -0.58
HMGB1P16-201ENST00000447155 SPDYE2Q495Y8 402 aa11.41□□□□□ -0.58
HMGB1P16-201ENST00000447155 OSCARQ8IYS5 282 aa11.41□□□□□ -0.58
HMGB1P16-201ENST00000447155 ZNF692Q9BU19 519 aaPredicted RBP11.4□□□□□ -0.58
HMGB1P16-201ENST00000447155 VASPP50552 380 aaPredicted RBP11.36□□□□□ -0.59
HMGB1P16-201ENST00000447155 SSUH2Q9Y2M2 353 aa11.35□□□□□ -0.59
HMGB1P16-201ENST00000447155 PABPN1Q86U42 306 aaKnown RBP eCLIP11.26□□□□□ -0.61
HMGB1P16-201ENST00000447155 STAG3Q9UJ98 1225 aa11.23□□□□□ -0.61
HMGB1P16-201ENST00000447155 IFNLR1Q8IU57 520 aaPredicted RBP11.22□□□□□ -0.61
HMGB1P16-201ENST00000447155 RBM42Q9BTD8 480 aaKnown RBP11.12□□□□□ -0.63
HMGB1P16-201ENST00000447155 PLCD3Q8N3E9 789 aa11.09□□□□□ -0.63
HMGB1P16-201ENST00000447155 KLHL34Q8N239 644 aa11.08□□□□□ -0.64
HMGB1P16-201ENST00000447155 SLC24A1O60721 1099 aa11.06□□□□□ -0.64
HMGB1P16-201ENST00000447155 SPOCK2Q92563 424 aa11.06□□□□□ -0.64
HMGB1P16-201ENST00000447155 MIER1Q8N108 512 aa11.05□□□□□ -0.64
HMGB1P16-201ENST00000447155 AKT1S1Q96B36 256 aa11.04□□□□□ -0.64
HMGB1P16-201ENST00000447155 PLEKHG5O94827 1062 aa11.01□□□□□ -0.65
HMGB1P16-201ENST00000447155 PKD2Q13563 968 aa10.98□□□□□ -0.65
HMGB1P16-201ENST00000447155 SPDYE1Q8NFV5 336 aaPredicted RBP10.98□□□□□ -0.65
HMGB1P16-201ENST00000447155 ZBTB47Q9UFB7 747 aaPredicted RBP10.97□□□□□ -0.65
HMGB1P16-201ENST00000447155 REM2Q8IYK8 340 aaPredicted RBP10.92□□□□□ -0.66
HMGB1P16-201ENST00000447155 CLEC11AQ9Y240 323 aa10.89□□□□□ -0.67
HMGB1P16-201ENST00000447155 DCAF8L2P0C7V8 631 aa10.87□□□□□ -0.67
HMGB1P16-201ENST00000447155 ECM2O94769 699 aaPredicted RBP10.86□□□□□ -0.67
HMGB1P16-201ENST00000447155 PRR29P0C7W0 189 aa10.86□□□□□ -0.67
HMGB1P16-201ENST00000447155 CIZ1Q9ULV3 898 aaPredicted RBP10.8□□□□□ -0.68
HMGB1P16-201ENST00000447155 CREBZFQ9NS37 354 aa10.79□□□□□ -0.68
HMGB1P16-201ENST00000447155 PITPNM1O00562 1244 aa10.77□□□□□ -0.69
HMGB1P16-201ENST00000447155 TRIM41Q8WV44 630 aa10.76□□□□□ -0.69
HMGB1P16-201ENST00000447155 NUBP1P53384 320 aa10.74□□□□□ -0.69
HMGB1P16-201ENST00000447155 GSE1Q14687 1217 aa10.74□□□□□ -0.69
HMGB1P16-201ENST00000447155 RGL2O15211 777 aa10.73□□□□□ -0.69
HMGB1P16-201ENST00000447155 PLCB2Q00722 1185 aa10.73□□□□□ -0.69
HMGB1P16-201ENST00000447155 MNX1P50219 401 aaPredicted RBP10.72□□□□□ -0.69
HMGB1P16-201ENST00000447155 DCAF8Q5TAQ9 597 aa10.67□□□□□ -0.7
HMGB1P16-201ENST00000447155 BBXQ8WY36 941 aaPredicted RBP10.66□□□□□ -0.7
HMGB1P16-201ENST00000447155 FAM212AQ96EL1 285 aa10.66□□□□□ -0.7
HMGB1P16-201ENST00000447155 NPM1P06748 294 aaKnown RBP eCLIP10.65□□□□□ -0.7
HMGB1P16-201ENST00000447155 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.62□□□□□ -0.71
HMGB1P16-201ENST00000447155 RASEFQ8IZ41 740 aa10.6□□□□□ -0.71
HMGB1P16-201ENST00000447155 CHGAP10645 457 aaKnown RBP10.57□□□□□ -0.72
HMGB1P16-201ENST00000447155 CHADLQ6NUI6 762 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 115.5 ms